View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_1 (Length: 926)
Name: NF1519_low_1
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 548; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 1 - 581
Target Start/End: Original strand, 52544096 - 52544672
Alignment:
| Q |
1 |
ttagtcatttgatggatcgttcatcaatgcactttactagatgtcccgtttataggattgttgataaatgctttgtgtctatcatacagtttgtgtataa |
100 |
Q |
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| T |
52544096 |
ttagtcatttgatggatcgttcatcaatgcactttactagatgtccc----ataggattgttgataaatgctttgtgtctatcatacagtttgtgtataa |
52544191 |
T |
|
| Q |
101 |
attcagttggctctgattgtttatggtggtcttgacgcaattgattgcttgtagaaatacttcatcatcagttttttattttaatgctagccttttatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52544192 |
attcagttggctctgattgtttatggtggtcttgactcaattgattgcttgtagaaatacttcatcatcagtttttgattttaatgctagccttttatgc |
52544291 |
T |
|
| Q |
201 |
tgaactaagcctatcgtgcatggtacatggttggatgttcctgacttttcttgcctttgaatatgttctgttatggcttgaaatattgattcttcttgaa |
300 |
Q |
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| T |
52544292 |
tgaactaagcctatcgtgcatggtacatggttggatgttcctgacttttcttgcctttgaatatgttctgttatggcttgaaatattgattcttcttgaa |
52544391 |
T |
|
| Q |
301 |
ttgtgtgcttgtgcaaaacttttaaattgtgtgtttgtgcaatgtgcatgcttcttttgttttcaaagaaataattttgtccaagaattatgttctctca |
400 |
Q |
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| T |
52544392 |
ttgtgtgcttgtgcaaaacttttaaattgtgtgtttgtgcaatgtgcatgcttcttttgttttcaaagaaataattttgtccaagaattatgttctctca |
52544491 |
T |
|
| Q |
401 |
tactagttatgctctattgggatttgaaggaaccttgccaatttctcctcaatcgtcgttatctcacaagcaggcacaaatgggtaactcaaataatctc |
500 |
Q |
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| T |
52544492 |
tactagttatgctctattgggatttgaaggaaccttgccaatttctcctcaatcgtcgttatctcacaagcaagcacaaatgggtaactcaaataatctc |
52544591 |
T |
|
| Q |
501 |
ttttttaattttatcaaccaattgtatgtgtgtgtgtttttattcttgattatccttccttgttaagaccatttaacttaa |
581 |
Q |
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| T |
52544592 |
ttttttaattttatcaaccaattgtatgtgtgtgtatttttattcttgattatccttccttgttaagaccatttaacttaa |
52544672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 565 - 910
Target Start/End: Original strand, 52544688 - 52545033
Alignment:
| Q |
565 |
aagaccatttaacttaaatgaatgtaagtttcctctatgtttgtaatgttgaacatgtacaattaatgtgttatgtgcagtttcatgaatttattggcat |
664 |
Q |
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| T |
52544688 |
aagaccatttaacttaaatgaatgtaagtttcctctatgtttgtaatgttgaacatgtacaattaatgtgttatgtgcagtttcatgaatttattggcat |
52544787 |
T |
|
| Q |
665 |
taacatgcactccgtctatgtctatctgtcatgaatttattaatgtaatgtttttcttcactgtatatagcattgttttttagatttggaaaatgattta |
764 |
Q |
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| T |
52544788 |
taacatgcaccccgtctatgtctatctgtcatgaatttattaatgtaatgtttttcttcactgtatatagcattgttttttagatttggaaaatgattta |
52544887 |
T |
|
| Q |
765 |
tatcgcagcatacattctcacgagagaatcgcgacacctaacattcagtcaaatagccaataattcaatggttgtatttcattcgtggtgtgtcgcaatg |
864 |
Q |
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| T |
52544888 |
tatcgcagcatacattctcacgagagaatcacgacacctaacattcagtcaaatagccaataattcaatggttgtatttcattcgtggtgtgtcgcaatg |
52544987 |
T |
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| Q |
865 |
tttttcttcgctgtatatagcattgttctttagatttttactttac |
910 |
Q |
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| T |
52544988 |
tttttcttcgctgtatatagcattgttctttagatttttactttac |
52545033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 806 - 895
Target Start/End: Complemental strand, 31490930 - 31490840
Alignment:
| Q |
806 |
cattcagtcaaatagccaataattcaatggttgtatttcattcgtggtgtg-tcgcaatgtttttcttcgctgtatatagcattgttcttt |
895 |
Q |
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|||||||||||| | ||||||| |||||||||||||||||||||||| || || | ||||||||||||||| |||||||||||| ||||| |
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| T |
31490930 |
cattcagtcaaacaaccaataaaccaatggttgtatttcattcgtggtctgctcactatgtttttcttcgctatatatagcattggtcttt |
31490840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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