View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1519_low_10 (Length: 557)
Name: NF1519_low_10
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 173; Significance: 9e-93; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 125 - 358
Target Start/End: Complemental strand, 10408643 - 10408410
Alignment:
| Q |
125 |
tatatcgtgaagcaaaagtaagaaaatcgagtctatcataatatgcagnnnnnnnnngttatccattcatatatcataattaagcattaaattgattttg |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10408643 |
tatatcgtgaagcaaaagtaagaaaatcgagtctatcataatatgcagttttttt--gctatccattcatatatcataattaagcattaaattgattttg |
10408546 |
T |
|
| Q |
225 |
tggtggatagttaataaatttgagataatagtttttt--agagggtggcaagattttaatagagaatgaggagtttctatagatatgccacatagacaca |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10408545 |
tggtggatagttaataaatttgagataatagttttttagagagggtggcaagattttaatagagaatgaggagtttctatagatatgccacatagacaca |
10408446 |
T |
|
| Q |
323 |
atccaagcattagaatgaagaaagtttataattcaa |
358 |
Q |
| |
|
|||||||||||| ||||| | |||||| |||||||| |
|
|
| T |
10408445 |
atccaagcattaaaatgatgcaagtttctaattcaa |
10408410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 10408825 - 10408725
Alignment:
| Q |
1 |
gccacatctatctaaatctgtatatttttgtatacaaagcgttaattttctcatcaaagaaggcaaagagtttgtttaacgtacaatacatattgctaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| || |||||||||||||||| |
|
|
| T |
10408825 |
gccacatctatctaaatctgtatatttttgtatacaaagcgttacttttctcatcaaagaaggcaaagaatttgtttaacatataatacatattgctaaa |
10408726 |
T |
|
| Q |
101 |
a |
101 |
Q |
| |
|
| |
|
|
| T |
10408725 |
a |
10408725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 419 - 497
Target Start/End: Complemental strand, 10408367 - 10408289
Alignment:
| Q |
419 |
acacaagacatgcaactgttatcagcataactgaattcatcaccttgaaagcttttagggttgatatacacccgcaccc |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10408367 |
acacaagacatgcaactgttatcagcataactgaattcatcaccttgaaagcttttagggttgatatacaccctcaccc |
10408289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 419 - 497
Target Start/End: Complemental strand, 10391625 - 10391547
Alignment:
| Q |
419 |
acacaagacatgcaactgttatcagcataactgaattcatcaccttgaaagcttttagggttgatatacacccgcaccc |
497 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
10391625 |
acacatgacatgcaactgttatcagcataactgaattcatcaccttgaaagctcttagggttgatatacacccccaccc |
10391547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 419 - 483
Target Start/End: Complemental strand, 10403134 - 10403070
Alignment:
| Q |
419 |
acacaagacatgcaactgttatcagcataactgaattcatcaccttgaaagcttttagggttgat |
483 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10403134 |
acacaagacatgcaactgttatcagaatgactgaattcatcaccttgaaagctattagggttgat |
10403070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 51168994 - 51169038
Alignment:
| Q |
314 |
atagacacaatccaagcattagaatgaagaaagtttataattcaa |
358 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
51168994 |
ataggcacaatccaagcattagaatgaagcaagtttctaattcaa |
51169038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 516 - 553
Target Start/End: Complemental strand, 10408273 - 10408236
Alignment:
| Q |
516 |
ctcccatcatcaaggaagtgatctggttcatctcactc |
553 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
10408273 |
ctcctatcatcaaggaagtgatctggttcatcccactc |
10408236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 9580138 - 9580085
Alignment:
| Q |
305 |
atatgccacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
358 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
9580138 |
atatgtcacataggcacaatccaagcattagaatgaagcaagtttcaaattcaa |
9580085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 9585833 - 9585780
Alignment:
| Q |
305 |
atatgccacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
358 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
9585833 |
atatgtcacataggcacaatccaagcattagaatgaagcaagtttcaaattcaa |
9585780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 358
Target Start/End: Complemental strand, 9366716 - 9366669
Alignment:
| Q |
311 |
cacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
358 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
9366716 |
cacataggcacaatccaagcattagaatgaaacaagtttctaattcaa |
9366669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 29902789 - 29902739
Alignment:
| Q |
308 |
tgccacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
358 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||| |||||| ||||||| |
|
|
| T |
29902789 |
tgccacataggcacaatccaaacattagaatgaagcaagtttcaaattcaa |
29902739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University