View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1519_low_106 (Length: 241)
Name: NF1519_low_106
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_106 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 144; Significance: 8e-76; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 4573397 - 4573544
Alignment:
| Q |
1 |
tttataatagtctgttggctattattttccatgcttgaatcagtcagacattggacatcacaaaaatatttgtccctttcaacaagagctcaagattatc |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4573397 |
tttataatagtctattggctattattttccatgcttgaatcagtcagacattggacatcacaaaaatatttgtccctttcaacaagagctcaagattatc |
4573496 |
T |
|
| Q |
101 |
tacaaagtctcaattccataaaagccaaattcatttttatatgttgtc |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4573497 |
tacaaagtctcaattccataaaagccaaattcatttttatatgttgtc |
4573544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 4559525 - 4559665
Alignment:
| Q |
1 |
tttataatagtctgttggctattattttccatgcttgaatcagtcagacattggacatcac-aaaaatatttgtccctttcaacaagagctcaagattat |
99 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| ||||||||| |||||||||||| |
|
|
| T |
4559525 |
tttataatagtctattggctattattttccatgcttgaatcagtcagacattggacatcacaaaaaaaaattgtccttttcaacaaaggctcaagattat |
4559624 |
T |
|
| Q |
100 |
ctacaaagtctcaattccataaaagccaaattcatttttat |
140 |
Q |
| |
|
|| ||||||| ||||| ||||||||||||||| | |||||| |
|
|
| T |
4559625 |
ctccaaagtcacaattgcataaaagccaaatttacttttat |
4559665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 4566383 - 4566526
Alignment:
| Q |
1 |
tttataatagtctgttggctattattttccatgcttgaatcagtcagacattggacatcac---aaaaatatttgtccctttcaacaagagctcaagatt |
97 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||| ||||| |||| |
|
|
| T |
4566383 |
tttataatagtctattggctattattttccatgcttgaatcagtcagacattagacatcacaaaaaaaatattagtccctttcaacaagggctcatgatt |
4566482 |
T |
|
| Q |
98 |
atctac-aaagtctcaattccataaaagccaaattcatttttat |
140 |
Q |
| |
|
|||| | ||||| ||||| |||||||| |||||||| |||||| |
|
|
| T |
4566483 |
atctccaaaagttacaattgcataaaagtcaaattcacttttat |
4566526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 16684780 - 16684647
Alignment:
| Q |
1 |
tttataatagtctgttggctattattttccatgcttgaa-tcagtcagacattggacatcacaaaaatatttgtccctttcaacaagagctcaagattat |
99 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
16684780 |
tttatgatagtcttttggctattattttccatgcttgaaatcagtcaaacattagacataacaaaaatattagtccctttcaacaagggctcaagattat |
16684681 |
T |
|
| Q |
100 |
ctacaaagtctcaattccataaaagccaaattca |
133 |
Q |
| |
|
|| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
16684680 |
ctccaaagtcacaattgcataaaagccaaattca |
16684647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University