View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_108 (Length: 238)
Name: NF1519_low_108
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_108 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 94 - 222
Target Start/End: Complemental strand, 21948204 - 21948076
Alignment:
| Q |
94 |
ctagcaaggtactttatctcctttgaataaaatgtttttctctcacacactttcaagtgtac-cctcggaagtttttattgaaggagcaaaaaagtactt |
192 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21948204 |
ctagcaaggtactttatctcctttggataaaatgtttttctc--acacactttcaagtgtatgcctcggaagtttttattgaaggagcaaaaaagtactt |
21948107 |
T |
|
| Q |
193 |
ctccttttcttaataaat-aaatgatactta |
222 |
Q |
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|||||||||||||||||| |||||||||||| |
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| T |
21948106 |
ctccttttcttaataaataaaatgatactta |
21948076 |
T |
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