View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_11 (Length: 545)
Name: NF1519_low_11
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 14 - 464
Target Start/End: Original strand, 34427554 - 34428004
Alignment:
| Q |
14 |
gaacattgaggagattgcgggagaaggttgatttgccacagttacttgctccacaaacaagtgtgatgggaggagttggactggatgttatggagttggc |
113 |
Q |
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| T |
34427554 |
gaacattgaggagattgcgggagaaggttgatttgccacagttacttgctccacaaacaagtgtgatgggaggagttggactggatgttatggagttagc |
34427653 |
T |
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| Q |
114 |
agcttgtgaccattgttgtgggatgtaaatgtctggaaggacaaaagcagaagatgaacccattgctctttcnnnnnnngtatgtgaaactgcaaaaccg |
213 |
Q |
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| T |
34427654 |
agcttgtgaccatttttgtgggatgtaaatgtctggaaggacaaaagcagaagatgaacccattgctctttctttttttgtatgtgaaattgcaaaaccg |
34427753 |
T |
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| Q |
214 |
atacactttgattataaaactcttttagtcattcatctttgtaaagatttagtgtgcattcaaatagtgttgaatgagagaaagtacaactccagtgcta |
313 |
Q |
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| T |
34427754 |
atacactttgattataaaactcttttagtcattcatctttgtaaagatttagtgtgcattcaaatagtgttgaatgagagaaagtacaactccagtgcta |
34427853 |
T |
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| Q |
314 |
cactacaagagcagagtggcagccaagaataagatgagtccttgtaaccaactgcacatggctttagtattttgtattttacttctttgactagaggact |
413 |
Q |
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| T |
34427854 |
cactacaagagcagagtggcagccaagaataagacgagtccttgtaaccaactgcacatggctttagtattttgtattttacttctttgactagaggact |
34427953 |
T |
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| Q |
414 |
cttttagtactgtgtttgttattttttcaatcacaaatcaatttctttatt |
464 |
Q |
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| T |
34427954 |
cttttagtaccgtgtttgttattttttcaatcacaaatcaatttctttatt |
34428004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 448 - 525
Target Start/End: Original strand, 34428017 - 34428094
Alignment:
| Q |
448 |
aaatcaatttctttattattgtgatcttaaaccaaatacaggtatttgtcgctataagtacatgtcaaccacgaacga |
525 |
Q |
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| T |
34428017 |
aaatcaatttctttattattgtgatcttaaaccaaatacaggtatttgtcggtataagtacatgtcaaccacgaacga |
34428094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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