View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_112 (Length: 238)
Name: NF1519_low_112
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_112 |
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Alignment Details
Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 36418728 - 36418856
Alignment:
| Q |
16 |
aggtcataggtgttatggaatgaggataatgtgtatgggcagcgcctctcatcgcaccaccgtgctagccgctacatctaaaaggaacaaatttgaatga |
115 |
Q |
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| T |
36418728 |
aggtcataggtgttctggaatgaggataatgcgtaggggcagcgcctctcatcgcaccaccgcgctagccgctacatctaaaaggaacaaatttgaatga |
36418827 |
T |
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| Q |
116 |
gggggaggcggtggaggggtggtcgttca |
144 |
Q |
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| T |
36418828 |
ggggaaggcgttggagaggtggtcgttca |
36418856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 36418890 - 36418950
Alignment:
| Q |
178 |
taagggagcatcctcctatcttccaaaagtaacatgcatttcttaattttgtctaacatcc |
238 |
Q |
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| T |
36418890 |
taagggagcatcctcctatcttcctaaagttacatgcatttcttaattttgtctaacatcc |
36418950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 36409038 - 36409097
Alignment:
| Q |
178 |
taagggagcatcctcctatcttccaaaagtaacatgcatttcttaattttgtctaacatcc |
238 |
Q |
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| T |
36409038 |
taagggagcatcctcat-tcttccttaagttacaaccatttcttaattttgtctaacatcc |
36409097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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