View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_114 (Length: 236)
Name: NF1519_low_114
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_114 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33931471 - 33931251
Alignment:
| Q |
1 |
tctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattcacagtaatgatgcagtgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
33931471 |
tctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattcataacaatgatgcagtgat |
33931372 |
T |
|
| Q |
101 |
atgttatcttttgattcgtttatgtgtaaatatcttctgtagagtagatgagttgattttattgatttatttacatacaaaacaaattaataaaatttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33931371 |
atgttatcttttgattcgtttatgtgtaaatatcttctgtagagtagatgagttgattttattgatttatttacatacaaaacaaattaataaaatttct |
33931272 |
T |
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| Q |
201 |
gtgtataaacaaacttctttt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
33931271 |
gtgtataaacaaacttctttt |
33931251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 33938276 - 33938177
Alignment:
| Q |
1 |
tctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattcacagtaatgatgcagtgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
33938276 |
tctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattcataacaatgatgcagtgat |
33938177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 42839889 - 42839791
Alignment:
| Q |
1 |
tctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattcacagtaatgatgcagtga |
99 |
Q |
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| T |
42839889 |
tctaagtccattgaagaatgtaaagtgatgattaaaagatttgatttggatggtgatggtgtgcttagttttgaagagttcagaatcatgatggagtga |
42839791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 42846697 - 42846616
Alignment:
| Q |
1 |
tctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattca |
82 |
Q |
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|||||||| ||||| ||||| ||| ||||||||| |||||||||||||| |||||| ||||||| ||||| ||||||| |
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| T |
42846697 |
tctaagtccattgaagaatgcaaattgatgattaaaagatttgatttggatggtgatggtgtgcttagttttgaagaattca |
42846616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 42849684 - 42849603
Alignment:
| Q |
1 |
tctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattca |
82 |
Q |
| |
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|||||||| ||||| ||||| ||| ||||||||| |||||||||||||| |||||| ||||||| ||||| ||||||| |
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| T |
42849684 |
tctaagtccattgaagaatgcaaattgatgattaaaagatttgatttggatggtgatggtgtgcttagttttgaagaattca |
42849603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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