View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1519_low_120 (Length: 227)
Name: NF1519_low_120
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_120 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 43932170 - 43931950
Alignment:
| Q |
7 |
tgattgatcattgtagtttgttggagcttgtaagaaacctccagtgttctgtataatcactgaatacatggctggaggctcattgagaaaataccttcta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43932170 |
tgattgatcattgtagtttgttggagcttgtaagaaacctccagtgttctgtataatcactgaatacatggctggaggctcattgagaaaataccttcta |
43932071 |
T |
|
| Q |
107 |
cagcaaggaccacattcagttcctctcaaactggttcttgaattagcccttgacattgcaagaggaatgcagtatcttcattctcaaggaatacttcata |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43932070 |
cagcaaggaccacattcagttcctctcaaactggttcttgaattagcccttgacattgcaagaggaatgcagtatcttcattctcaaggaatacttcata |
43931971 |
T |
|
| Q |
207 |
gggatctcaaatcagaaaatc |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
43931970 |
gggatctcaaatcagaaaatc |
43931950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 32 - 227
Target Start/End: Complemental strand, 35132064 - 35131869
Alignment:
| Q |
32 |
gcttgtaagaaacctccagtgttctgtataatcactgaatacatggctggaggctcattgagaaaataccttctacagcaaggaccacattcagttcctc |
131 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| ||||| || ||||||| || |||||||| |||||||| | || |||| ||||||||||||||| | |
|
|
| T |
35132064 |
gcttgcaagaaaccaccagtgttctgtataattactgagtatttggctggtggttcattgaggaaatacctacatcaacaagaaccacattcagttccac |
35131965 |
T |
|
| Q |
132 |
tcaaactggttcttgaattagcccttgacattgcaagaggaatgcagtatcttcattctcaaggaatacttcatagggatctcaaatcagaaaatc |
227 |
Q |
| |
|
|||| ||||| ||||||| || ||||||||||| |||||| | ||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
35131964 |
atgaacttgttctgaaattagcactagacattgcaaggggaatgaaatatcttcattctcaagggatacttcatagggatctcaaatcagagaatc |
35131869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University