View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1519_low_121 (Length: 220)

Name: NF1519_low_121
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1519_low_121
NF1519_low_121
[»] chr4 (23 HSPs)
chr4 (37-188)||(22375837-22375988)
chr4 (39-188)||(18493732-18493881)
chr4 (37-188)||(54508510-54508661)
chr4 (37-183)||(34021252-34021398)
chr4 (37-188)||(4608113-4608263)
chr4 (37-188)||(23237458-23237608)
chr4 (37-183)||(27512912-27513057)
chr4 (37-188)||(39606238-39606388)
chr4 (37-188)||(32595039-32595189)
chr4 (60-183)||(18502008-18502130)
chr4 (48-114)||(44222960-44223026)
chr4 (48-101)||(13768529-13768582)
chr4 (37-116)||(20618746-20618825)
chr4 (48-101)||(46721870-46721923)
chr4 (37-114)||(21733870-21733947)
chr4 (52-101)||(43892884-43892933)
chr4 (48-114)||(30226670-30226736)
chr4 (40-101)||(8762860-8762921)
chr4 (37-114)||(20167499-20167576)
chr4 (52-101)||(23609297-23609346)
chr4 (48-101)||(32824627-32824680)
chr4 (52-92)||(37927787-37927827)
chr4 (41-101)||(16608609-16608669)
[»] chr1 (18 HSPs)
chr1 (37-189)||(50099595-50099747)
chr1 (37-188)||(50303874-50304025)
chr1 (37-181)||(36156901-36157044)
chr1 (37-183)||(44592577-44592722)
chr1 (37-188)||(43410927-43411078)
chr1 (48-183)||(27773554-27773688)
chr1 (52-188)||(43022554-43022689)
chr1 (48-101)||(10619794-10619847)
chr1 (48-101)||(44429839-44429892)
chr1 (51-101)||(39618463-39618513)
chr1 (48-101)||(7493398-7493451)
chr1 (48-101)||(15757407-15757460)
chr1 (38-117)||(6764477-6764556)
chr1 (39-114)||(26632988-26633062)
chr1 (67-114)||(29681098-29681145)
chr1 (40-101)||(10989478-10989539)
chr1 (136-189)||(26633083-26633136)
chr1 (151-183)||(48365960-48365992)
[»] chr3 (13 HSPs)
chr3 (38-188)||(26769761-26769911)
chr3 (37-188)||(22775201-22775351)
chr3 (39-192)||(37224382-37224534)
chr3 (37-188)||(37057514-37057664)
chr3 (51-117)||(30500933-30500999)
chr3 (51-101)||(35238736-35238786)
chr3 (48-101)||(46823535-46823588)
chr3 (51-101)||(17653349-17653399)
chr3 (48-114)||(52724605-52724671)
chr3 (48-101)||(30342664-30342717)
chr3 (49-101)||(15871364-15871416)
chr3 (48-99)||(35734441-35734492)
chr3 (155-188)||(35733782-35733815)
[»] chr6 (9 HSPs)
chr6 (37-183)||(7590441-7590586)
chr6 (48-101)||(3886141-3886194)
chr6 (48-101)||(583320-583373)
chr6 (48-98)||(13703075-13703125)
chr6 (48-101)||(29363906-29363959)
chr6 (48-96)||(30386828-30386876)
chr6 (51-101)||(34729509-34729559)
chr6 (57-113)||(5122304-5122360)
chr6 (151-183)||(30383576-30383608)
[»] chr2 (17 HSPs)
chr2 (37-188)||(2096092-2096242)
chr2 (48-101)||(1043355-1043408)
chr2 (48-101)||(9190344-9190397)
chr2 (48-100)||(36314577-36314629)
chr2 (51-101)||(1593092-1593142)
chr2 (48-114)||(21613376-21613442)
chr2 (48-114)||(41732625-41732691)
chr2 (39-101)||(14160593-14160655)
chr2 (48-89)||(5382702-5382743)
chr2 (48-101)||(10585101-10585154)
chr2 (48-116)||(9754040-9754107)
chr2 (39-99)||(14950634-14950694)
chr2 (151-188)||(1043249-1043286)
chr2 (40-101)||(8230407-8230468)
chr2 (151-188)||(21612730-21612767)
chr2 (40-101)||(35524944-35525005)
chr2 (48-76)||(12563840-12563868)
[»] chr7 (26 HSPs)
chr7 (37-188)||(23333245-23333395)
chr7 (48-189)||(27571542-27571682)
chr7 (37-183)||(27098834-27098979)
chr7 (37-183)||(27179324-27179469)
chr7 (52-119)||(33036092-33036159)
chr7 (51-117)||(2410955-2411021)
chr7 (48-101)||(45810001-45810054)
chr7 (48-183)||(38892096-38892229)
chr7 (48-114)||(41532412-41532478)
chr7 (48-101)||(83979-84032)
chr7 (51-101)||(48609467-48609517)
chr7 (48-101)||(758572-758625)
chr7 (68-117)||(19532357-19532406)
chr7 (48-101)||(33335986-33336039)
chr7 (48-101)||(46212038-46212091)
chr7 (51-117)||(36558351-36558417)
chr7 (48-117)||(37205792-37205860)
chr7 (48-89)||(39719311-39719352)
chr7 (49-97)||(2826749-2826797)
chr7 (151-190)||(303920-303959)
chr7 (67-114)||(5437160-5437207)
chr7 (151-188)||(5481251-5481288)
chr7 (151-188)||(41533087-41533124)
chr7 (40-101)||(45855378-45855439)
chr7 (152-188)||(33036024-33036060)
chr7 (151-191)||(36558810-36558850)
[»] chr5 (13 HSPs)
chr5 (37-183)||(39570821-39570966)
chr5 (37-183)||(12947239-12947386)
chr5 (37-114)||(6735901-6735978)
chr5 (48-114)||(21360905-21360971)
chr5 (48-101)||(17769338-17769391)
chr5 (37-84)||(42092340-42092387)
chr5 (57-183)||(12933027-12933152)
chr5 (47-101)||(13517243-13517296)
chr5 (48-101)||(39685690-39685744)
chr5 (40-101)||(3498715-3498776)
chr5 (151-188)||(21361580-21361617)
chr5 (151-188)||(39684409-39684446)
chr5 (132-180)||(42091890-42091938)
[»] chr8 (7 HSPs)
chr8 (37-182)||(33538307-33538451)
chr8 (48-101)||(18606019-18606072)
chr8 (48-101)||(21441955-21442008)
chr8 (48-101)||(4072589-4072642)
chr8 (48-101)||(41323543-41323596)
chr8 (51-101)||(10713855-10713905)
chr8 (41-101)||(1233787-1233847)
[»] scaffold0049 (3 HSPs)
scaffold0049 (48-101)||(46875-46928)
scaffold0049 (48-101)||(15003-15056)
scaffold0049 (151-190)||(15811-15850)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 37 - 188
Target Start/End: Complemental strand, 22375988 - 22375837
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgact 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||       ||||||    
T  22375988 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatgtagtcatttttttatgact 22375889  T
Q  137 ttggttactttcgggtggccacctcataaaattattgctagcttcgcagctg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22375888 ttggttactttcgggtggccacctcataaaattattgctagcttcgccgctg 22375837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 39 - 188
Target Start/End: Complemental strand, 18493881 - 18493732
Alignment:
Q  39 attgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgacttt 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||       ||||||||    
T  18493881 attgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatgtagtcatttttttatgacttt 18493782  T
Q  139 ggttactttcgggtggccacctcataaaattattgctagcttcgcagctg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18493781 ggttactttcgggtggccacctcataaaattattgctagcttcgccgctg 18493732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 37 - 188
Target Start/End: Complemental strand, 54508661 - 54508510
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgact 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||       ||||||    
T  54508661 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatgtagtcatttttttatgact 54508562  T
Q  137 ttggttactttcgggtggccacctcataaaattattgctagcttcgcagctg 188  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  54508561 ttgattactttcgggtggccacctcataaaattattgctagcttcgccgctg 54508510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 37 - 183
Target Start/End: Complemental strand, 34021398 - 34021252
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgact 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||       ||||||    
T  34021398 ttattgaatttgtaggtatatttttatgtttagctacccctaatagtatatatttggctaccccaggttcgattttagatgtagtcatttttttatgact 34021299  T
Q  137 ttggttactttcgggtggccacctcataaaattattgctagcttcgc 183  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  34021298 ttggttacttttgggtggccacctcataaaattattgctagcttcgc 34021252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 4608113 - 4608263
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgact 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||| |||       ||||||    
T  4608113 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctacctcaagttcgattttagatgtaatca-ttttttatgact 4608211  T
Q  137 ttggttactttcgggtggccacctcataaaattattgctagcttcgcagctg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4608212 ttggttactttcgggtggccacctcataaaattattgctagcttcgccgctg 4608263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 37 - 188
Target Start/End: Complemental strand, 23237608 - 23237458
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgact 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||| | |       ||||||    
T  23237608 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctgccccaagttcgattttagatgtaat-aattttttatgact 23237510  T
Q  137 ttggttactttcgggtggccacctcataaaattattgctagcttcgcagctg 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  23237509 ttggttacttttgggtggccacctcataaaattattgctagcttcgccgctg 23237458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 27512912 - 27513057
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgact 136  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||| | |       ||||||    
T  27512912 ttattgagttagtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgattttaggtgtaat-aattttttatgact 27513010  T
Q  137 ttggttactttcgggtggccacctcataaaattattgctagcttcgc 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27513011 ttggttactttcgggtggccacctcataaaattattgctagcttcgc 27513057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 37 - 188
Target Start/End: Complemental strand, 39606388 - 39606238
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgact 136  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||| || | | |       ||||||    
T  39606388 ttattgagttagtaggtatatttttatgtttagctacccctaataatatatatttggctacctcaagttcgattttaggtgcaat-aattttttatgact 39606290  T
Q  137 ttggttactttcgggtggccacctcataaaattattgctagcttcgcagctg 188  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  39606289 ttggttactttcggatggccacctcataaaattattgctagcttcgccgctg 39606238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 37 - 188
Target Start/End: Complemental strand, 32595189 - 32595039
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgact 136  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| || | | |       ||||||    
T  32595189 ttattgagttagtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgattttaggtgcaat-aattttttatgact 32595091  T
Q  137 ttggttactttcgggtggccacctcataaaattattgctagcttcgcagctg 188  Q
    |||||| ||||||| ||||||||||| |||||||||||||||||||| ||||    
T  32595090 ttggtttctttcggatggccacctcaaaaaattattgctagcttcgccgctg 32595039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 60 - 183
Target Start/End: Original strand, 18502008 - 18502130
Alignment:
Q  60 ttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgactttggttactttcgggtggccacc 159  Q
    ||||||||| |||||||| ||||||||||||||||||||| |  ||||||||||| |||| | |        ||| ||| |||| ||| |||||||||||    
T  18502008 ttatgtttaactacccctgataatatatatttggctaccctaagttcgattttaggtgtaat-aattttttgtgaatttcgttagttttgggtggccacc 18502106  T
Q  160 tcataaaattattgctagcttcgc 183  Q
    ||||||||||||||||||||||||    
T  18502107 tcataaaattattgctagcttcgc 18502130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 44223026 - 44222960
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttag 114  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| | |||||  |||||||||||    
T  44223026 gtaggtatatttttatgtttaactacccctaataatatatatttggttgccccaagttcgattttag 44222960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 13768529 - 13768582
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  13768529 gtaggtatatttttatatttagctacccctaataatatatatttagctacccca 13768582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 20618746 - 20618825
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagat 116  Q
    |||||||||  |||||||||||||| | || |||||||||||||||||||| ||||||||||||| |||  |||||||||    
T  20618746 ttattgaatgagtaggtatatttttgtattaagctacccctaataatatatgtttggctaccccaaatttaattttagat 20618825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 46721870 - 46721923
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  46721870 gtagggatatttttatttttagctacccctaataatatatatttagctacccca 46721923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 21733870 - 21733947
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttag 114  Q
    |||||||||  |||||||||  | ||| |||||||||||||||||||||||| ||||||||||||  || ||||||||    
T  21733870 ttattgaataagtaggtatacatatatatttagctacccctaataatatatagttggctaccccaagtttgattttag 21733947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 43892933 - 43892884
Alignment:
Q  52 gtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||||| ||||||||||||||||||||||||||| ||| |||||    
T  43892933 gtatatttttatatttagctacccctaataatatatatttagctgcccca 43892884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 30226736 - 30226670
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttag 114  Q
    ||||||||||| |||| ||| ||||| ||||||||||||||||||| |||||||  ||||| |||||    
T  30226736 gtaggtatattattatatttggctactcctaataatatatatttggttaccccatgttcgactttag 30226670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 8762921 - 8762860
Alignment:
Q  40 ttgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||| ||| ||||||||||||| |||||||||||| ||||| | |||||| |||||||||    
T  8762921 ttgaatatgttggtatatttttatatttagctaccccaaataaaaaatatttagctacccca 8762860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 20167499 - 20167576
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttag 114  Q
    |||||||||  ||| |||||||||||| || ||||||| ||  ||||||||||||||||||||||  || ||||||||    
T  20167499 ttattgaatgagtaagtatatttttatattaagctacctctggtaatatatatttggctaccccaagtttgattttag 20167576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 23609346 - 23609297
Alignment:
Q  52 gtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||||| ||| |||| ||||||||||||||||||||||| ||||    
T  23609346 gtatatttttatattttgctatccctaataatatatatttggctatccca 23609297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 32824680 - 32824627
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||||||||| |||| ||||||||| ||||| ||||||||||| ||||    
T  32824680 gtaggtatatttttatatttaactacccctagtaataaatatttggctatccca 32824627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 37927787 - 37927827
Alignment:
Q  52 gtatatttttatgtttagctacccctaataatatatatttg 92  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  37927787 gtatatttttatatttagctacccataataatatatatttg 37927827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 16608669 - 16608609
Alignment:
Q  41 tgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||| || ||||||| ||||| |||||||||||| ||||||| |||||  |||||||||    
T  16608669 tgaattggttggtatatatttatatttagctaccccaaataataaatattgagctacccca 16608609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 1e-61; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 37 - 189
Target Start/End: Original strand, 50099595 - 50099747
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgact 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||       ||||||    
T  50099595 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttgactaccccaggttcgattttagatgtagtcatttttttatgact 50099694  T
Q  137 ttggttactttcgggtggccacctcataaaattattgctagcttcgcagctgc 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50099695 ttggttactttcgggtggccacctcataaaattattgctagcttcgccgctgc 50099747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 37 - 188
Target Start/End: Complemental strand, 50304025 - 50303874
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgact 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||       ||||||    
T  50304025 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctatctcaggttcgattttagatgtagtcatttttttatgact 50303926  T
Q  137 ttggttactttcgggtggccacctcataaaattattgctagcttcgcagctg 188  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  50303925 ttggttactttcggatggccacctcataaaattattgctagcttcgccgctg 50303874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 37 - 181
Target Start/End: Complemental strand, 36157044 - 36156901
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgact 136  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||| ||||||| |||| | |       ||||||    
T  36157044 ttattgaatttataggtatatttttatgcttagctacccctaataatatatatttggctaccccaagttcaattttaggtgtaat-aatttcttatgact 36156946  T
Q  137 ttggttactttcgggtggccacctcataaaattattgctagcttc 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  36156945 ttggttactttcgggtggccacctcataaaattattgctagcttc 36156901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 44592577 - 44592722
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgact 136  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||| |||| | |       ||||||    
T  44592577 ttattgagttagtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagtttgattttaggtgtaat-aattttttatgact 44592675  T
Q  137 ttggttactttcgggtggccacctcataaaattattgctagcttcgc 183  Q
    || ||||||||||||||||||||||||||||||||||||||||||||    
T  44592676 tttgttactttcgggtggccacctcataaaattattgctagcttcgc 44592722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 43410927 - 43411078
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgact 136  Q
    ||||||| || |||||||||||||||| |||||||| |||||||||||||||||||| ||||| |  || ||||||||||||| | |       ||||||    
T  43410927 ttattgagttagtaggtatatttttatatttagctatccctaataatatatatttggttaccctaagtttgattttagatgtaataatttttttatgact 43411026  T
Q  137 ttggttactttcgggtggccacctcataaaattattgctagcttcgcagctg 188  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||| ||||    
T  43411027 ttggttactttcgggtggctacctcataaaattattgctagcctcgctgctg 43411078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 183
Target Start/End: Original strand, 27773554 - 27773688
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgactttggttacttt 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||| |||| | |        |||||| ||| |||||    
T  27773554 gtaggtatatttttatgtttagctacccctaataatatatatttgcctaccccaagttcgattttaggtgtaat-aattttttgtgacttcggtaacttt 27773652  T
Q  148 cgggtggccacctcataaaattattgctagcttcgc 183  Q
    |||||||| |||||||||||||||||||||||||||    
T  27773653 cgggtggctacctcataaaattattgctagcttcgc 27773688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 188
Target Start/End: Original strand, 43022554 - 43022689
Alignment:
Q  52 gtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgactttggttactttcggg 151  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |  |||||||||||||||| | |       |||| |||| ||||||||||     
T  43022554 gtatatttttatgtttaactacccctaataatatatatttggctacccaaagttcgattttagatgtaat-aattttttatgattttgattactttcgga 43022652  T
Q  152 tggccacctcataaaattattgctagcttcgcagctg 188  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  43022653 tggccacctcataaaattattgcaagcttcgccgctg 43022689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 10619794 - 10619847
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  10619794 gtaggtatatttttatatttagctacccctaataatatatatttagctacccca 10619847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 44429892 - 44429839
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  44429892 gtaggtatatttttatatttagctacccctaataatatttatttggctacccca 44429839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 39618513 - 39618463
Alignment:
Q  51 ggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  39618513 ggtatatttttatattaagctacccctaataatatatatttggctacccca 39618463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 7493398 - 7493451
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||||||||| |||||||||| | ||||||||||||||||||||||||    
T  7493398 gtaggtatatttttatatttagctacctccaataatatatatttggctacccca 7493451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 15757407 - 15757460
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||||||||| |||| ||||||||||||||||||||||  ||||||||    
T  15757407 gtaggtatatttttatatttatctacccctaataatatatatttaactacccca 15757460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 6764477 - 6764556
Alignment:
Q  38 tattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatg 117  Q
    ||||||||  ||| |||||||||| | || ||||||| ||||||||||||||||||||| |||| |||  ||||||||||    
T  6764477 tattgaatgagtatgtatatttttgtattaagctaccgctaataatatatatttggctatcccaaatttaattttagatg 6764556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 26632988 - 26633062
Alignment:
Q  39 attgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttag 114  Q
    ||||| || |||||||||||||||||||||| || || ||||||||||||||||| |||| ||  |||||||||||    
T  26632988 attgagttagtaggtatatttttatgtttagtta-ccttaataatatatatttggttacctcaagttcgattttag 26633062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 29681098 - 29681145
Alignment:
Q  67 tagctacccctaataatatatatttggctaccccagattcgattttag 114  Q
    ||||||||||| |||||||||||||||||||||||  || ||||||||    
T  29681098 tagctacccctgataatatatatttggctaccccaagtttgattttag 29681145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 10989539 - 10989478
Alignment:
Q  40 ttgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||| ||| ||||| ||||||| |||||||||||| ||||| | |||||| |||||||||    
T  10989539 ttgaatatgttggtatgtttttatatttagctaccccaaataaaaaatatttagctacccca 10989478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 26633083 - 26633136
Alignment:
Q  136 tttggttactttcgggtggccacctcataaaattattgctagcttcgcagctgc 189  Q
    |||| ||| ||||||||| ||| ||||||||||| ||||||||||||| |||||    
T  26633083 tttgattaatttcgggtgaccatctcataaaattgttgctagcttcgccgctgc 26633136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 48365992 - 48365960
Alignment:
Q  151 gtggccacctcataaaattattgctagcttcgc 183  Q
    ||||||||||||||||| |||||||||||||||    
T  48365992 gtggccacctcataaaaatattgctagcttcgc 48365960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 38 - 188
Target Start/End: Complemental strand, 26769911 - 26769761
Alignment:
Q  38 tattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgactt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||       |||||||    
T  26769911 tattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgattttagatgtagtcatttttttatgactt 26769812  T
Q  138 tggttactttcgggtggccacctcataaaattattgctagcttcgcagctg 188  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  26769811 tggttacttttgggtggccacctcataaaattattgctagcttcgccgctg 26769761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 37 - 188
Target Start/End: Complemental strand, 22775351 - 22775201
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgact 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||| | |       ||||||    
T  22775351 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgattttaggtgtaat-aattttttatgact 22775253  T
Q  137 ttggttactttcgggtggccacctcataaaattattgctagcttcgcagctg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22775252 ttggttactttcgggtggccacctcataaaattattgctagcttcgccgctg 22775201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 37224382 - 37224534
Alignment:
Q  39 attgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgacttt 138  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||| |||| | |       ||||||||    
T  37224382 attgagttagtaggtatatttttatgtttagctacccctaataatatatatttggctatcccaagttcgattttaggtgtaat-aattttttatgacttt 37224480  T
Q  139 ggttactttcgggtggccacctcataaaattattgctagcttcgcagctgcttg 192  Q
     ||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  37224481 tgttactttcgggtggccacctcataaaattattgctagcttcgccactgcttg 37224534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 37057514 - 37057664
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgact 136  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| || | | |       || |||    
T  37057514 ttattgagttagtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgattttaggtgcaat-aactttttataact 37057612  T
Q  137 ttggttactttcgggtggccacctcataaaattattgctagcttcgcagctg 188  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  37057613 ttggttactttcgggtggtcacctcataaaattattgctagcttcgccgctg 37057664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 30500999 - 30500933
Alignment:
Q  51 ggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatg 117  Q
    ||||||||||||| || |||||||||||||||||||||| |||||||||||  || |||||||||||    
T  30500999 ggtatatttttatattaagctacccctaataatatatatctggctaccccaagtttgattttagatg 30500933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 35238786 - 35238736
Alignment:
Q  51 ggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  35238786 ggtatatttttatattaagctacccctaataatatatatttggctacccca 35238736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 46823535 - 46823588
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||||||||| |||||||||||||||||||||||| || |||||||||    
T  46823535 gtaggtatatttttatatttagctacccctaataatatataattagctacccca 46823588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 17653399 - 17653349
Alignment:
Q  51 ggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    ||||||||||||| |||| |||||||||||||||||||||| |||||||||    
T  17653399 ggtatatttttatatttaactacccctaataatatatatttagctacccca 17653349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 52724605 - 52724671
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttag 114  Q
    ||||||||||| |||| |||  ||| ||||||||||||||||||||||||||||  ||||| |||||    
T  52724605 gtaggtatattattatatttgactatccctaataatatatatttggctaccccatgttcgactttag 52724671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 30342664 - 30342717
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    ||||| |||||||||| |||| ||||| |||||||||||||||| |||||||||    
T  30342664 gtagggatatttttatttttaactacctctaataatatatatttagctacccca 30342717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 15871416 - 15871364
Alignment:
Q  49 taggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    ||||||||||||||| ||||||||||| || |||| |||||||||||| ||||    
T  15871416 taggtatatttttatatttagctacccttagtaatttatatttggctatccca 15871364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 35734492 - 35734441
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccc 99  Q
    |||||||||||||||| ||||| ||||| ||||||||| ||||| |||||||    
T  35734492 gtaggtatatttttatatttagttacccttaataatatgtatttagctaccc 35734441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 35733815 - 35733782
Alignment:
Q  155 ccacctcataaaattattgctagcttcgcagctg 188  Q
    |||||||||| |||||||||||||||||||||||    
T  35733815 ccacctcatagaattattgctagcttcgcagctg 35733782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 3e-53; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 37 - 183
Target Start/End: Complemental strand, 7590586 - 7590441
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgact 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| | |       ||||||    
T  7590586 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgattttagatgtaat-aattttttatgact 7590488  T
Q  137 ttggttactttcgggtggccacctcataaaattattgctagcttcgc 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  7590487 ttggttactttcgggtggccacctcataaaattattgctagcttcgc 7590441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 3886141 - 3886194
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3886141 gtaggtatatttttatatttagctacccctaataatatatatttggctacccca 3886194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 583373 - 583320
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  583373 gtaggtatatttttatatttagctacccctaataatatatatttggttacccca 583320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 13703075 - 13703125
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacc 98  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  13703075 gtaggtatatttttatatttagctacccctaataatatatatttagctacc 13703125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 29363959 - 29363906
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||||||||| ||||||||| ||||||||||||||||| |||||||||    
T  29363959 gtaggtatatttttatatttagctactcctaataatatatatttagctacccca 29363906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 30386876 - 30386828
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggcta 96  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  30386876 gtaggtatatttttatatttagctacccctaataatatatatttagcta 30386828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 34729509 - 34729559
Alignment:
Q  51 ggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    ||||||||||||| ||||||||||||||||| ||||||||| |||||||||    
T  34729509 ggtatatttttatatttagctacccctaatagtatatatttagctacccca 34729559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 5122360 - 5122304
Alignment:
Q  57 tttttatgtttagctacccctaataatatatatttggctaccccagattcgatttta 113  Q
    ||||||| | ||| ||||||||||||||||| |||| ||||||||  ||||||||||    
T  5122360 tttttatatatagttacccctaataatatatttttgactaccccaagttcgatttta 5122304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 30383608 - 30383576
Alignment:
Q  151 gtggccacctcataaaattattgctagcttcgc 183  Q
    |||||||||||||| ||||||||||||||||||    
T  30383608 gtggccacctcatagaattattgctagcttcgc 30383576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 2096092 - 2096242
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgact 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||  | |       ||||||    
T  2096092 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgattttaggtgtcat-aattttttatgact 2096190  T
Q  137 ttggttactttcgggtggccacctcataaaattattgctagcttcgcagctg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2096191 ttggttactttcgggtggccacctcataaaattattgctagcttcgccgctg 2096242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 1043408 - 1043355
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  1043408 gtaggtatatttttatatttagctacccctaataatatttatttggctacccca 1043355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 9190397 - 9190344
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  9190397 gtaggtatatttttatatttagctacccctaataatatttatttggctacccca 9190344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 36314629 - 36314577
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccc 100  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  36314629 gtaggtatatttttatatttagttacccctaataatatatatttggctacccc 36314577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 1593142 - 1593092
Alignment:
Q  51 ggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  1593142 ggtatatttttatatttagttacccctaataatatatatttggctacccca 1593092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 21613442 - 21613376
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttag 114  Q
    ||||||||||| |||| ||| |||||||||||||||||||||||||||||||||  ||||| |||||    
T  21613442 gtaggtatattattatatttggctacccctaataatatatatttggctaccccatgttcgactttag 21613376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 41732691 - 41732625
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttag 114  Q
    |||||||| ||||||| | |||||||||||||||||||||||||||||||||||  || ||||||||    
T  41732691 gtaggtatgtttttatatgtagctacccctaataatatatatttggctaccccaagttagattttag 41732625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 14160655 - 14160593
Alignment:
Q  39 attgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||  |||||||||||| |||  ||||||||||||||||||||||| ||||||||||||    
T  14160655 attgaataagtaggtatatttgtatacttagctacccctaataatatatagttggctacccca 14160593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 5382743 - 5382702
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatat 89  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  5382743 gtaggtatatttttatatttagctacccctaataatatatat 5382702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 10585101 - 10585154
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  10585101 gtagggatatttttatttttagctacccctaataatatatatttagctatccca 10585154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 9754040 - 9754107
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagat 116  Q
    |||||||||||||||| ||||||||||  |||||||||||| ||||||| |||| ||| ||||||||||    
T  9754040 gtaggtatatttttatatttagctaccgttaataatatataattggcta-cccaaatttgattttagat 9754107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 14950694 - 14950634
Alignment:
Q  39 attgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccc 99  Q
    |||||||  |||||||||||| |||  ||||||||||||||||||| ||| ||||||||||    
T  14950694 attgaataagtaggtatatttgtatacttagctacccctaataatacatagttggctaccc 14950634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 1043286 - 1043249
Alignment:
Q  151 gtggccacctcataaaattattgctagcttcgcagctg 188  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  1043286 gtggccacctcatagaattattgctagcttcgccgctg 1043249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 8230468 - 8230407
Alignment:
Q  40 ttgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||| ||| ||||| ||||||| |||||||||||| ||||| | |||||| |||||||||    
T  8230468 ttgaatatgttggtatgtttttatatttagctaccccaaataaaaaatatttagctacccca 8230407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 21612767 - 21612730
Alignment:
Q  151 gtggccacctcataaaattattgctagcttcgcagctg 188  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  21612767 gtggccacctcataaaaatattgctagcttcgccgctg 21612730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 35525005 - 35524944
Alignment:
Q  40 ttgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||| ||| ||||| ||||||| |||||||||||| ||||| | |||||| |||||||||    
T  35525005 ttgaatatgttggtatgtttttatatttagctaccccaaataaaaaatatttagctacccca 35524944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 76
Target Start/End: Complemental strand, 12563868 - 12563840
Alignment:
Q  48 gtaggtatatttttatgtttagctacccc 76  Q
    |||||||||||||||||||||||||||||    
T  12563868 gtaggtatatttttatgtttagctacccc 12563840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 37 - 188
Target Start/End: Complemental strand, 23333395 - 23333245
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgact 136  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||| || | | |       || |||    
T  23333395 ttattgagttagtaggtatatttttatgtttagctacccctaataatatatatttggctactccaagttcgattttaggtgcaat-aattttttataact 23333297  T
Q  137 ttggttactttcgggtggccacctcataaaattattgctagcttcgcagctg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23333296 ttggttactttcgggtggccacctcataaaattattgctagcttcgccgctg 23333245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 48 - 189
Target Start/End: Complemental strand, 27571682 - 27571542
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgactttggttacttt 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||| |||| | |        ||||||||||||||||    
T  27571682 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccctatgttcgattttaggtgtaat-aattttttgtgactttggttacttt 27571584  T
Q  148 cgggtggccacctcataaaattattgctagcttcgcagctgc 189  Q
     ||||||||||||||||||||||||||||||||||| |||||    
T  27571583 agggtggccacctcataaaattattgctagcttcgccgctgc 27571542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 37 - 183
Target Start/End: Complemental strand, 27098979 - 27098834
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgact 136  Q
    ||||||| || |||||| ||| |||||||||||||||||||||||||||||||||||||| |||| |||  |||||| ||||| | |        |||||    
T  27098979 ttattgagttagtaggtttatatttatgtttagctacccctaataatatatatttggctatcccaaatttaattttaaatgtaat-aattttttgtgact 27098881  T
Q  137 ttggttactttcgggtggccacctcataaaattattgctagcttcgc 183  Q
    ||| ||||||| ||||||||||||||||||||||||| |||||||||    
T  27098880 ttgattactttggggtggccacctcataaaattattgttagcttcgc 27098834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 27179324 - 27179469
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgact 136  Q
    ||||||| || |||||| ||| |||||||||||||||||||||||||||||||||||||| |||| |||  |||||| ||||| | |        |||||    
T  27179324 ttattgagttagtaggtttatatttatgtttagctacccctaataatatatatttggctatcccaaatttaattttaaatgtaat-aattttttgtgact 27179422  T
Q  137 ttggttactttcgggtggccacctcataaaattattgctagcttcgc 183  Q
    ||| ||||||| ||||||||||||||||||||||||| |||||||||    
T  27179423 ttgattactttggggtggccacctcataaaattattgttagcttcgc 27179469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 33036159 - 33036092
Alignment:
Q  52 gtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgta 119  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||  ||||||||||| ||||    
T  33036159 gtatatttttatgtttaactacccctgataatatatatttggctaccccaagttcgattttaggtgta 33036092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 2410955 - 2411021
Alignment:
Q  51 ggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatg 117  Q
    ||||||||||||| || |||||||||||||||||||||||||||||| ||| ||| |||||||||||    
T  2410955 ggtatatttttatattaagctacccctaataatatatatttggctactccaaatttgattttagatg 2411021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 45810054 - 45810001
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  45810054 gtaggtatatttttatatttagctacccccaataatatatatttggctacccca 45810001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 183
Target Start/End: Complemental strand, 38892229 - 38892096
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgactttggttacttt 147  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||  |||||||  ||||||||||| |||| | |        ||| ||| |||| |||    
T  38892229 gtaggtatatttttatgtttagcta-ccctgataatatatatttgattaccccaagttcgattttaggtgtaat-aattttttgtgaatttcgttagttt 38892132  T
Q  148 cgggtggccacctcataaaattattgctagcttcgc 183  Q
     || || |||||||||||||||||||||||||||||    
T  38892131 tggatgaccacctcataaaattattgctagcttcgc 38892096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 41532412 - 41532478
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttag 114  Q
    ||||||||||| |||| ||| |||||||||||||||||||||||||||||||||  ||||| |||||    
T  41532412 gtaggtatattattatatttggctacccctaataatatatatttggctaccccatgttcgactttag 41532478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 84032 - 83979
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||||||||| ||||||||||||||||||||||||||| | |||||||    
T  84032 gtaggtatatttttatatttagctacccctaataatatatatttagttacccca 83979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 48609517 - 48609467
Alignment:
Q  51 ggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    ||||||||||||| |||| |||||||||||||||||||||| |||||||||    
T  48609517 ggtatatttttatatttaactacccctaataatatatatttagctacccca 48609467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 758572 - 758625
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||||||||| |||| |||||| ||||||||||||||| |||||||||    
T  758572 gtaggtatatttttatatttatctacccttaataatatatatttagctacccca 758625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 19532406 - 19532357
Alignment:
Q  68 agctacccctaataatatatatttggctaccccagattcgattttagatg 117  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  19532406 agctacccttaataatatatatttggctaccccaaatttgattttagatg 19532357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 33336039 - 33335986
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||| ||||| |||||||||||||||||||||||||||  ||||||||    
T  33336039 gtaggtatatatttatatttagctacccctaataatatatatttaactacccca 33335986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 46212091 - 46212038
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||||||||| |||||||||  |||||||||||||||| |||||||||    
T  46212091 gtaggtatatttttatatttagctacttctaataatatatatttagctacccca 46212038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 36558351 - 36558417
Alignment:
Q  51 ggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatg 117  Q
    ||||||||||||| || |  |||||||||||||||||||||||||||| ||  || |||||||||||    
T  36558351 ggtatatttttatattaaattacccctaataatatatatttggctacctcaagtttgattttagatg 36558417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 37205860 - 37205792
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatg 117  Q
    |||||| ||||||||| || ||||| |||| ||||||||||||||||||||| || || |||||||||||    
T  37205860 gtaggtttatttttatattaagctatcccttataatatatatttggctacccaag-tttgattttagatg 37205792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 39719311 - 39719352
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatat 89  Q
    |||||||||||||||| |||||||| ||||||||||||||||    
T  39719311 gtaggtatatttttatatttagctatccctaataatatatat 39719352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 2826749 - 2826797
Alignment:
Q  49 taggtatatttttatgtttagctacccctaataatatatatttggctac 97  Q
    ||||||||||||||| |||||||| | |||||||||||||||| |||||    
T  2826749 taggtatatttttatatttagctatctctaataatatatatttagctac 2826797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 190
Target Start/End: Complemental strand, 303959 - 303920
Alignment:
Q  151 gtggccacctcataaaattattgctagcttcgcagctgct 190  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  303959 gtggccacctcatagaattattgctagcttcgccgctgct 303920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 5437207 - 5437160
Alignment:
Q  67 tagctacccctaataatatatatttggctaccccagattcgattttag 114  Q
    ||||||||||| |||||||||||||||||||||||  || ||||||||    
T  5437207 tagctacccctgataatatatatttggctaccccaagtttgattttag 5437160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 5481251 - 5481288
Alignment:
Q  151 gtggccacctcataaaattattgctagcttcgcagctg 188  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  5481251 gtggccacctcataaaaatattgctagcttcgccgctg 5481288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 41533087 - 41533124
Alignment:
Q  151 gtggccacctcataaaattattgctagcttcgcagctg 188  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  41533087 gtggccacctcataaaaatattgctagcttcgccgctg 41533124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 45855378 - 45855439
Alignment:
Q  40 ttgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    ||||||| || ||||||| ||||| |||||||||||| ||||||| |||||  |||||||||    
T  45855378 ttgaattggtcggtatatatttatatttagctaccccaaataataaatattgagctacccca 45855439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 33036060 - 33036024
Alignment:
Q  152 tggccacctcataaaattattgctagcttcgcagctg 188  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  33036060 tggccacctcataaaattattgctagtttcgccgctg 33036024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 36558810 - 36558850
Alignment:
Q  151 gtggccacctcataaaattattgctagcttcgcagctgctt 191  Q
    ||||||||||||| ||| ||||||||||||||| |||||||    
T  36558810 gtggccacctcatgaaaatattgctagcttcgccgctgctt 36558850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 39570821 - 39570966
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgact 136  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||| | |       ||||||    
T  39570821 ttattgagttagtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgattttaggtgtaat-aattttttatgact 39570919  T
Q  137 ttggttactttcgggtggccacctcataaaattattgctagcttcgc 183  Q
    || ||||||||||| ||||||| ||||||||||||||||||||||||    
T  39570920 tttgttactttcggatggccacgtcataaaattattgctagcttcgc 39570966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 183
Target Start/End: Complemental strand, 12947386 - 12947239
Alignment:
Q  37 ttattgaatttgtaggtatattttt-atgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgac 135  Q
    ||||||| || |||||||||||||| ||||||||||||| |||||||||||||||| |||||||||  |||||||||   |||| | |       |||||    
T  12947386 ttattgagttagtaggtatattttttatgtttagctacctctaataatatatattttgctaccccaagttcgattttttgtgtaataatttttttatgac 12947287  T
Q  136 tttggttactttcgggtggccacctcataaaattattgctagcttcgc 183  Q
    ||| |||| ||||||||||||||||||||||||||||| |||||||||    
T  12947286 tttagttattttcgggtggccacctcataaaattattgttagcttcgc 12947239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 6735901 - 6735978
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttag 114  Q
    ||||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||||||||  |||||||||||    
T  6735901 ttattgagttagtaggtatatttttatatttagctacctctaataatatatatttggctaccccaagttcgattttag 6735978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 21360905 - 21360971
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttag 114  Q
    ||||||||||| |||| ||| |||||||||||||||||||||||||||||||||  |||||||||||    
T  21360905 gtaggtatattattatatttggctacccctaataatatatatttggctaccccatgttcgattttag 21360971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 17769391 - 17769338
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  17769391 gtaggtatatttttatatttagctacccctaataatatatatttagctacccca 17769338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 42092387 - 42092340
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataata 84  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||    
T  42092387 ttattgagttagtaggtatatttttatgtttagctacccctaataata 42092340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 183
Target Start/End: Complemental strand, 12933152 - 12933027
Alignment:
Q  57 tttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgactttggttactttcgggtggcc 156  Q
    |||||||||||||||||| |||||||||||||||| | |||||||  |||||||||   |||| | |       |||||||| |||| ||||||||| ||    
T  12933152 tttttatgtttagctacctctaataatatatattttgttaccccaagttcgattttttgtgtaat-aattttttatgactttagttattttcgggtgacc 12933054  T
Q  157 acctcataaaattattgctagcttcgc 183  Q
    |||| |||||||||||  |||||||||    
T  12933053 accttataaaattattattagcttcgc 12933027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 13517243 - 13517296
Alignment:
Q  47 tgtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||  ||||||||    
T  13517243 tgtaggtatatttttatatttagcta-ccctaataatatatatttaactacccca 13517296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 39685744 - 39685690
Alignment:
Q  48 gtaggtatatttttatgtttagctaccc-ctaataatatatatttggctacccca 101  Q
    |||||||||||||||| |||||||| || |||||||||||||||| |||||||||    
T  39685744 gtaggtatatttttatatttagctatcctctaataatatatatttagctacccca 39685690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 3498776 - 3498715
Alignment:
Q  40 ttgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||| ||| ||||| ||||||| |||||||||||| ||||| | |||||| |||||||||    
T  3498776 ttgaatatgttggtatgtttttatatttagctaccccaaataaaaaatatttagctacccca 3498715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 21361580 - 21361617
Alignment:
Q  151 gtggccacctcataaaattattgctagcttcgcagctg 188  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  21361580 gtggccacctcataaaaatattgctagcttcgccgctg 21361617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 39684446 - 39684409
Alignment:
Q  151 gtggccacctcataaaattattgctagcttcgcagctg 188  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  39684446 gtggccacctcatagaattattgctagcttcgccgctg 39684409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 42091938 - 42091890
Alignment:
Q  132 tgactttggttactttcgggtggccacctcataaaattattgctagctt 180  Q
    ||||||||||||| ||||||| | ||| | |||||||||||||||||||    
T  42091938 tgactttggttaccttcgggtagtcactttataaaattattgctagctt 42091890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 37 - 182
Target Start/End: Complemental strand, 33538451 - 33538307
Alignment:
Q  37 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccagattcgattttagatgtagtcannnnnnnatgact 136  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |   ||||||||||| |||  | |       ||||||    
T  33538451 ttattgaatttgtaggtatatttttatgtttagctactcctaataatatatatttggttacctcgagttcgattttaggtgtcat-aattttttatgact 33538353  T
Q  137 ttggttactttcgggtggccacctcataaaattattgctagcttcg 182  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  33538352 ttggttactttcgggtgaccacctcataaaattattgctagcttcg 33538307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 18606019 - 18606072
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18606019 gtaggtatatttttatatttagctacccctaataatatatatttggctacccca 18606072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 21442008 - 21441955
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  21442008 gtaggtatatttttatatttagctacccctaataatatatatttagctacccca 21441955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 4072642 - 4072589
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||||||||| |||||||||||||||||||||||| || |||||||||    
T  4072642 gtaggtatatttttatatttagctacccctaataatatataattagctacccca 4072589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 41323596 - 41323543
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||||||||| |||||||||||||||||||||||| || |||||||||    
T  41323596 gtaggtatatttttatatttagctacccctaataatatataattagctacccca 41323543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 10713855 - 10713905
Alignment:
Q  51 ggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    ||||||||||||| || | |||||||| |||||||| ||||||||||||||    
T  10713855 ggtatatttttatattaaactaccccttataatatacatttggctacccca 10713905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 1233847 - 1233787
Alignment:
Q  41 tgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||| || ||||||| ||||| |||||||||||| ||||||| |||||  |||||||||    
T  1233847 tgaattggttggtatatatttatatttagctaccccaaataataaatattgagctacccca 1233787  T

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Target: scaffold0049 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 46875 - 46928
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46875 gtaggtatatttttatatttagctacccctaataatatatatttggctacccca 46928  T

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Target: scaffold0049; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 15003 - 15056
Alignment:
Q  48 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 101  Q
    ||||||||||||||||  |||||||||||||||||||||||||| |||||||||    
T  15003 gtaggtatatttttataattagctacccctaataatatatatttagctacccca 15056  T

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Target: scaffold0049; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 190
Target Start/End: Original strand, 15811 - 15850
Alignment:
Q  151 gtggccacctcataaaattattgctagcttcgcagctgct 190  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  15811 gtggccacctcatagaattattgctagcttcgccgctgct 15850  T

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