View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_126 (Length: 204)
Name: NF1519_low_126
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_126 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 5829387 - 5829221
Alignment:
| Q |
21 |
tcctctgaaatctcagaaataggtgcagctgcaggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagtt |
120 |
Q |
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| T |
5829387 |
tcctctgaaatctcagaaataggtgcagctgcaggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagtt |
5829288 |
T |
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| Q |
121 |
cgatagtagcacgacgaggattggtcttgtgtttctcacaaagttccggcaaaaatactcctgttgt |
187 |
Q |
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| T |
5829287 |
caattgtagcacgacgagggttggtcttgtgtttctcacaaagttccggcaaaaatactcctgttgt |
5829221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 40 - 182
Target Start/End: Original strand, 5822521 - 5822663
Alignment:
| Q |
40 |
taggtgcagctgcaggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagttcgatagtagcacgacgagg |
139 |
Q |
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| T |
5822521 |
taggtgcagatgctggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagttcaattgtagcacgacgagg |
5822620 |
T |
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| Q |
140 |
attggtcttgtgtttctcacaaagttccggcaaaaatactcct |
182 |
Q |
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| T |
5822621 |
gttgttcttgtgtttctcacaaagttccggcaaaaatactcct |
5822663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 41 - 187
Target Start/End: Original strand, 5831980 - 5832126
Alignment:
| Q |
41 |
aggtgcagctgcaggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagttcgatagtagcacgacgagga |
140 |
Q |
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| T |
5831980 |
aggtgcagctgcaggtgctaacacaatgtcctctgaaactgaagaagccgggccaaatgcagctccggagctcacaagctcgaccatagcacgacgaggg |
5832079 |
T |
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| Q |
141 |
ttggtcttgtgtttctcacaaagttccggcaaaaatactcctgttgt |
187 |
Q |
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| T |
5832080 |
ttggtcttgtgtttctcacatagttctggcaaaaatactcctgttgt |
5832126 |
T |
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