View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_128 (Length: 201)
Name: NF1519_low_128
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_128 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 4e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 24484172 - 24484334
Alignment:
| Q |
23 |
ccactaccaaatggtgtcaattgaaaattttgtcccttgaaattaatttcttaaccctaaaacctctcaggtgaaaataaatttggattatcccaaatat |
122 |
Q |
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| T |
24484172 |
ccactaccaaatggtgtcaattgaaaattttgtcccttgaaattaatttctgaacccaaaaacctctgaggtgaaaataaatttggattatcccaaatat |
24484271 |
T |
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| Q |
123 |
tagggtttcttccaatggcccattcattaattaggacttgtgcacctttaggaacaatgtatc |
185 |
Q |
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| T |
24484272 |
tagggtttcttccaatggcccattcattaattaggacttgtgcacctttaggaacaatgtatc |
24484334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 24467059 - 24467211
Alignment:
| Q |
18 |
ttctcccactaccaaatggtgtcaattgaaaattttgtcccttgaaattaatttcttaaccctaaaacctctcaggtgaaaataaatttggattatccca |
117 |
Q |
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| T |
24467059 |
ttctcccaccaccaaatggtgtcaattgaaaattttgaccattgaaattaatttctgaccccaaaaacctctcaggcaaaaatgaatttggattatccca |
24467158 |
T |
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| Q |
118 |
aatattagggtttcttccaatggcccattcattaattaggacttgtgcacctt |
170 |
Q |
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| T |
24467159 |
aatattagggtttcttcctatggcccattcatttattacgacctgtgcacctt |
24467211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 4e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 31135276 - 31135428
Alignment:
| Q |
18 |
ttctcccactaccaaatggtgtcaattgaaaattttgtcccttgaaattaatttcttaaccctaaaacctctcaggtgaaaataaatttggattatccca |
117 |
Q |
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| T |
31135276 |
ttctcccactaccaaatggtatgaattgataatgttggcccttgaaattaatttctgaccccaaaaacctttctggtgaaaacaaagttggattatccca |
31135375 |
T |
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| Q |
118 |
aatattagggtttcttccaatggcccattcattaattaggacttgtgcacctt |
170 |
Q |
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| T |
31135376 |
aatattagggtttcttcccatagcccattcattaattagaatttgtgcacctt |
31135428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 31153763 - 31153611
Alignment:
| Q |
18 |
ttctcccactaccaaatggtgtcaattgaaaattttgtcccttgaaattaatttcttaaccctaaaacctctcaggtgaaaataaatttggattatccca |
117 |
Q |
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| T |
31153763 |
ttctcccactaccaaatggtatgaattgataatgttggcccttgaaattaatttctgaccccaaaaacctttctggtgaaaacaaagttggattatccca |
31153664 |
T |
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| Q |
118 |
aatattagggtttcttccaatggcccattcattaattaggacttgtgcacctt |
170 |
Q |
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| T |
31153663 |
aatattagggtttcttcccatagcccattcattaattagaatttgtgcacctt |
31153611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 31131648 - 31131496
Alignment:
| Q |
18 |
ttctcccactaccaaatggtgtcaattgaaaattttgtcccttgaaattaatttcttaaccctaaaacctctcaggtgaaaataaatttggattatccca |
117 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||| | || |||| |||||||||||||| ||| ||||||||||||| |
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| T |
31131648 |
ttctcccactaccaaatggtgtcaattgaaaatcatggcccttgaaattaatttcagaccctaaaaatctctcaggtgaaaacaaagttggattatccca |
31131549 |
T |
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| Q |
118 |
aatattagggtttcttccaatggcccattcattaattaggacttgtgcacctt |
170 |
Q |
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| T |
31131548 |
aattttagggttccttcccatggcccatttgttaatcaagacttgtgcacctt |
31131496 |
T |
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