View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_14 (Length: 515)
Name: NF1519_low_14
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 52876962 - 52876464
Alignment:
| Q |
1 |
gattcaataaatatctctatcatgagtgagttgtaaaaatcatta--gagacaacaacaaaccatttttcaatgcgttgttgtagaaagtttgttatgga |
98 |
Q |
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| T |
52876962 |
gattcaataaatatctctatcatgagtgagttgtaaaaatcattattgagacaacaa-aaaccatttttcaatgcgttgttgtagaaagtttgttatgga |
52876864 |
T |
|
| Q |
99 |
atcaagcaacgtataaagtttgtcaatgacaatacacaatcacaagaaactttgttggaaaaaatgcactatatgtgtttgtgcatacgtcaacatgttc |
198 |
Q |
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| T |
52876863 |
atcaagcaacgtataaagtttgtcaatgacaatacacaatcacaagaaactttgttggaaaaaatgcactatatgtgtttgtgcatacgtcaacatgttc |
52876764 |
T |
|
| Q |
199 |
atttttaagtatgtagacaagagggtgaaatgtataaaaaagaaaatcaatggaagtatgaagtcatctacaaagttaaacctacgactaaaaatcagtg |
298 |
Q |
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| T |
52876763 |
atttttaagtatgtagacaagagggtgaaatgtataaaaaagaaaatcaatgaaagtatgaagtcatcaacaaagttaaacctacgactaaaaatcagtg |
52876664 |
T |
|
| Q |
299 |
caacttttgcctttgtttttgaaaagnnnnnnnnntcatggatttgtcttgtttcatcaattagagtcggttaatgacatgtttaaagaaaacaaattaa |
398 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52876663 |
caacttttgcctttgtttttgaaaag-aaaaaaaatcatggatttgttttgtttcatcaattagagtcggttaatgacatgtttaaagaaaacaaattaa |
52876565 |
T |
|
| Q |
399 |
atctcatacaattatcaatatgagtaatatattccaaagtttgtctctttgtcttaaagttttagtgcataaattgcaatgataatagaaattgtgttgg |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52876564 |
atctcatacaattatcaatatgagtaatatattccaaagtttgtctctttgtcttaaagttttagtgcataaattgcaatgataatagaaattgtattgg |
52876465 |
T |
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