View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_18 (Length: 498)
Name: NF1519_low_18
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 206 - 485
Target Start/End: Original strand, 39370424 - 39370703
Alignment:
| Q |
206 |
aaaattgcaaaccccctcaagatacacaattatccaagctcccaatgcaccaaaatagactagagttgttgtggtgaagaaaactcagtatgactccata |
305 |
Q |
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| T |
39370424 |
aaaattgcaaaccccatcaagatacacaattatccaagctcccaatgcaccaaaatagactagagttgttgtggtgaagaaaactcagtatgactccata |
39370523 |
T |
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| Q |
306 |
tttatattaactctctacttttgtttcttccaactattctcatgaatcataacaaatcacatctacagaatgaactctcttcaacttttctgtcttctcc |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39370524 |
tttatattaactctctacttttgtttcttccaactattctcatgaatcataacaaatcacatctacagaatgaactctcttcaacttttctgtcttctcc |
39370623 |
T |
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| Q |
406 |
tatagacttcgcaaactctccacagtaatggcactaaacattactcatatattttggttgaaatcttctaccatgttgat |
485 |
Q |
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| T |
39370624 |
tatagacttcgcaaactctccacagtaatggcactaaacattactcatatattttggttgaaatcttctaccatgttgat |
39370703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 39370264 - 39370437
Alignment:
| Q |
7 |
tggacatcatcataccccactcccccacctgaactatcaagccaacttttttctcctttctttggtgaagaattgtttgtaaagcaaccagagaaaatct |
106 |
Q |
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| T |
39370264 |
tggacctcattataccccactcccccacctgaactatcaagccaacttttttctcctttctttggtgaagaattgtttgtaaagcaacctgagaaaatct |
39370363 |
T |
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| Q |
107 |
ccacacaagggnnnnnnnnnctcaataaaaatttattactcaacctgaatgatataagaacaaaattgcaaaccc |
181 |
Q |
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| T |
39370364 |
tcacacaaggg-aaaaaaaactcaataaaaatttattactcaacctgaatgatataagaacaaaattgcaaaccc |
39370437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 32496719 - 32496767
Alignment:
| Q |
167 |
caaaattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaa |
216 |
Q |
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| T |
32496719 |
caaaattgcaaacc-tctcaattataatttttgcacagagaaattgcaaa |
32496767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 301
Target Start/End: Original strand, 3511669 - 3511762
Alignment:
| Q |
206 |
aaaattgcaaaccccctcaagatacacaattatccaagctcccaatgcaccaaaatagactagagttgttgtggtgaagaaaactcagtatgactc |
301 |
Q |
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| T |
3511669 |
aaaattgcaaactctctcaagacacacaactacccaatc-cccaatacacccaaa-agactagagttgttgtggtgatgaaaactcaatataactc |
3511762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 37883016 - 37883075
Alignment:
| Q |
159 |
tataagaacaaaattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaaccc |
219 |
Q |
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|||||| ||||||||||||||| |||| |||||||||| |||| |||||||||||||||| |
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| T |
37883016 |
tataaggacaaaattgcaaacc-tctcgattacaatttttgcatggaaaaattgcaaaccc |
37883075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 288
Target Start/End: Original strand, 9687435 - 9687552
Alignment:
| Q |
168 |
aaaattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaaccccctcaagatacacaattatccaagctcccaatgcaccaaaatagacta |
267 |
Q |
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||||||||||||||||||||||| || | |||| | |||||||||||||| ||||||| |||||| ||| ||||| || ||| ||| ||| |||||| |
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| T |
9687435 |
aaaattgcaaaccctctcaattaatatctttgca-tggaaaattgcaaaccctctcaagacacacaactattcaagc-cctaatatacccaaa-agacta |
9687531 |
T |
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| Q |
268 |
gagttgttgtggtgaagaaaa |
288 |
Q |
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||| ||||||||| ||||||| |
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| T |
9687532 |
gagctgttgtggtaaagaaaa |
9687552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 27048996 - 27049043
Alignment:
| Q |
170 |
aattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaacc |
218 |
Q |
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||||||||||| |||||||| |||||| ||||| ||||||||||||||| |
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| T |
27048996 |
aattgcaaacc-tctcaattgcaatttttgcacggaaaaattgcaaacc |
27049043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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