View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_2 (Length: 765)
Name: NF1519_low_2
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 301 - 749
Target Start/End: Original strand, 6881148 - 6881597
Alignment:
| Q |
301 |
ggtttttgaaagtagacactagtttgttggagcaagcaaccataatccttttaactttttgcactattaatgaatttaattaattaaatattaagaggat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6881148 |
ggtttttgaaagtagacactagtttgttggagcaagcaaccataattcttttaactttttgcactattaatgaatttaattaattaaatattaagaggat |
6881247 |
T |
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| Q |
401 |
ttgagtaccaggacagagatatttcctagttctcttaacgatggaggcacatttacaatttttgtgacctgtttgtatgcttagttagattttcggtttg |
500 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6881248 |
ttgagtaccaggacggagatatttcctagttctcttaatgatggaggcacatttacaatttttgtgaactgtttgtatgcttagttagattttcggtttg |
6881347 |
T |
|
| Q |
501 |
ttctcattgtcaattcagtcattgcaattgt-gaaatgannnnnnnnnnnnnnnngctgccacagagaattctccatagtattcttgagtaaaagagatt |
599 |
Q |
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| T |
6881348 |
ttctcattgtcaattcagtcattgcaattgtggaaatgatttttatttttattttgctgccacagagaattctccatagtattcttgagtaaaagagatt |
6881447 |
T |
|
| Q |
600 |
atgagcagagtagaataaagagagattgtttatatgtcagtttggtaaatacaggattcggttacagttgaacctgaattctcagtactgaattgcacat |
699 |
Q |
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| T |
6881448 |
atgagcagagtagaataaagagagattgtttatatgtcagtttggtaaatacagaattcggttacggttgaacctgaattctcagtactgaattgcacat |
6881547 |
T |
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| Q |
700 |
cagaattgaacaagtttactatcaactttaaggcaaccatagtctatatg |
749 |
Q |
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| T |
6881548 |
cagaattgaacaagtttactatcaactttaaggcaaccatagtctatatg |
6881597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 6880849 - 6880969
Alignment:
| Q |
15 |
tctcttgacttgctttgaatcgcgaattggtacgtgtgtatcagttgacggtacttttgcaaattggttcacacaaattctcttgtaatttgtggaaatt |
114 |
Q |
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| T |
6880849 |
tctcttgacttgctttgaatcgcgaattggtacgtgtgtatcagttggcggtacttttgcaaattggttcacacaaattctctcgtaatttgtggaaatt |
6880948 |
T |
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| Q |
115 |
gacgaatcgatgtaagtgtgt |
135 |
Q |
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||||||| ||||||||||||| |
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| T |
6880949 |
gacgaattgatgtaagtgtgt |
6880969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 35457973 - 35458094
Alignment:
| Q |
10 |
attattctcttgacttgctttgaatcgcgaattggtacgtgtgtatcagttgacggtacttttgcaaattggttcacacaaattctcttgtaatttgtgg |
109 |
Q |
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| T |
35457973 |
attattcttttgacttgctttgaaccgcgaattggtacgtgtgtatcagttggtggtacttttgcaaattggttcacacaaattctcttgtaatttgtgg |
35458072 |
T |
|
| Q |
110 |
aaattgacgaatcgatgtaagt |
131 |
Q |
| |
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|||| || |||| |||| |||| |
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| T |
35458073 |
aaatcgatgaattgatgcaagt |
35458094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 301 - 420
Target Start/End: Original strand, 35458263 - 35458386
Alignment:
| Q |
301 |
ggtttttgaaagtagacactagtttgttggagca---agcaaccataatccttttaactttt-tgcactattaatgaatttaattaattaaatattaaga |
396 |
Q |
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||||||||||| ||||||| ||||||||| |||| |||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35458263 |
ggtttttgaaaatagacaccagtttgttgcagcagcgagcaactataatccttttaatttttttgcactattaatgaatttaattaattaaatattaaga |
35458362 |
T |
|
| Q |
397 |
ggatttgagtaccaggacagagat |
420 |
Q |
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|||||||||||||||||| ||||| |
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| T |
35458363 |
ggatttgagtaccaggacggagat |
35458386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 192 - 257
Target Start/End: Original strand, 6881026 - 6881091
Alignment:
| Q |
192 |
ccttctgatggagaaaataaattttggataaaacctttttgaagcttgaagaaatagatcattttc |
257 |
Q |
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| T |
6881026 |
ccttctgatggagaaaataaattttggataaaacctttttgaagcttgaagaaatagatcattttc |
6881091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 35458167 - 35458215
Alignment:
| Q |
201 |
ggagaaaataaattttggataaaacctttttgaagcttgaagaaataga |
249 |
Q |
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||||||||||||||| | | ||||||||||||||||||||||||||||| |
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| T |
35458167 |
ggagaaaataaatttcgcagaaaacctttttgaagcttgaagaaataga |
35458215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 452 - 502
Target Start/End: Original strand, 6845715 - 6845765
Alignment:
| Q |
452 |
tttacaatttttgtgacctgtttgtatgcttagttagattttcggtttgtt |
502 |
Q |
| |
|
|||||||| || |||| |||||||||||||||||||| ||||| ||||||| |
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| T |
6845715 |
tttacaatcttcgtgaactgtttgtatgcttagttaggttttcagtttgtt |
6845765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 22276681 - 22276632
Alignment:
| Q |
75 |
aaattggttcacacaaattctcttgtaatttgtggaaattgacgaatcga |
124 |
Q |
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|||||||||||||||||||||| ||||||| ||| |||| || ||||||| |
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| T |
22276681 |
aaattggttcacacaaattctcctgtaattcgtgaaaatcgatgaatcga |
22276632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 3180585 - 3180543
Alignment:
| Q |
356 |
tttttgcactattaatgaatttaattaattaaatattaagagg |
398 |
Q |
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||||||||||||||||||||| | ||||||||||||| ||||| |
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| T |
3180585 |
tttttgcactattaatgaattaatttaattaaatatttagagg |
3180543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 342 - 407
Target Start/End: Original strand, 24214521 - 24214586
Alignment:
| Q |
342 |
ataatccttttaactttttgcactattaatgaatttaattaattaaatattaagaggatttgagta |
407 |
Q |
| |
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|||||| ||||| ||||||||||||| || ||| ||| ||||||||||||||||| |||||||| |
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|
| T |
24214521 |
ataatctttttacttttttgcactattgattaatataactaattaaatattaagagattttgagta |
24214586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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