View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_20 (Length: 468)
Name: NF1519_low_20
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 205 - 453
Target Start/End: Original strand, 40834146 - 40834415
Alignment:
| Q |
205 |
actctggtccccctatgatactcgttcatattaaatgcataatagtaaactaacaaagatagacatcatcctcaagagaggataccctaaacccca---- |
300 |
Q |
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| T |
40834146 |
actctggtccccctatgatactcgttcatattaaatgcataatagtaaactaacaaagatagacatcatcctcaagagaggataccctaaaccccataag |
40834245 |
T |
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| Q |
301 |
----------------ccttcaattccaacagaaaaatt-aatcaaagcatgcatggaccacctagttgtacagtactgataacattagataaatccatt |
383 |
Q |
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| T |
40834246 |
gatcaccatgggaccaccttcaattccaacagaaaaatttaatcaaagcatgcatggaccacctagttgtacagtactgataacattagataaatccatt |
40834345 |
T |
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| Q |
384 |
aaatgcaacacaactaaaaccagacacaacacaacggtcttgccattatagactacacgtcaattcaatt |
453 |
Q |
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| T |
40834346 |
aaatgcaacacaactaaaaccagacacaacacaacggtcttgccattatagactacacgtcaattcaatt |
40834415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 40833962 - 40834019
Alignment:
| Q |
12 |
aattctaacag-ttttaacatattcttagcttagcgagtaaaccaataaaacataaag |
68 |
Q |
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| T |
40833962 |
aattctaacagcttttaacatattcttaccttagcgagtaaaccaataaaacataaag |
40834019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 40834112 - 40834150
Alignment:
| Q |
145 |
taaaagagaatatgcatgattatttcaaattcaaactct |
183 |
Q |
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| T |
40834112 |
taaaagagaatatgcatgattatttcaaattcaaactct |
40834150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 40834045 - 40834114
Alignment:
| Q |
64 |
taaagctgttatacaaaaacaa---agtaatttgcaaggaagtatgt---tggcctgtcatgacatttaa |
127 |
Q |
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| T |
40834045 |
taaagctgttatacaaaaacaaagtagtaatttgcaaggaagtatgtatgttgcctgtcatgacatttaa |
40834114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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