View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_21 (Length: 455)
Name: NF1519_low_21
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 76 - 440
Target Start/End: Complemental strand, 32502804 - 32502444
Alignment:
| Q |
76 |
ctttggttaaatacattgacagtatgtgacatatatacaatatggttgaaaatgcagattttctctgatgtttacattatataatgctaataatgtagaa |
175 |
Q |
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| T |
32502804 |
ctttggttaaatacattgacagtatgtgacatatataca---tggttgaaaatgcagattttctctgatgtttacattatataatgctaataatgtagaa |
32502708 |
T |
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| Q |
176 |
ttgaacaaaatatttgacttgccgagaggatttgatacattgacacaatgcatattccttgaaagttggagacagggaagaatatgtaactttctcatgt |
275 |
Q |
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| T |
32502707 |
ttcaacaaa-tatttgacttgccgagaggatttgatacattgacacaatgcatattccttgaaagttggagacaaggaagaatatgtaactttctcatgt |
32502609 |
T |
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| Q |
276 |
atgtataggtaacaacaatgaagttacatgtatgtttaaaatcttatatattttttgtaccnnnnnnnnnncttatatattttaagaatgttaatataga |
375 |
Q |
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| T |
32502608 |
atgtataggtaacaacaatgaagttacatgtatgtttaaaatcttatatattttttgtaccaaaaaaaaaacttatatattttaagaatgttaatatgga |
32502509 |
T |
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| Q |
376 |
ctccttctattaaataaaatagtttcaccaaatataatgctacactctctcacatatgatgaatc |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32502508 |
ctccttctattaaataaaatagtttcaccaaatataatgctacactctctcacatatgatgaatc |
32502444 |
T |
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