View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_23 (Length: 439)
Name: NF1519_low_23
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 38868639 - 38868217
Alignment:
| Q |
1 |
aaaattggatggtccagaacatgagatttatccattttactactaactgattattgagactcaaagaatgagggccagctcagaattctacgtttgattg |
100 |
Q |
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| T |
38868639 |
aaaattggatggtccagaacatgagatttatccattttactactaactgattattgagactcaaagaatgagggccagctcagaattctacgtttgattg |
38868540 |
T |
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| Q |
101 |
atgggaattgaatgacaattactcagattggaaagctaaacaaatcgaggttgctggatttgtcttggtgtacagttgaagaggactataccatgatcag |
200 |
Q |
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| T |
38868539 |
atgggaattgaatgacaattactc-gattggaaagctaaacaaatcgaggttgctggatttgtcttggtgtacagttgaagaggactataccatgatcag |
38868441 |
T |
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| Q |
201 |
tttcgaggaagatgttcacaaattagaacagttatatgcttttaccataatcaaaagtactttggaagactgtaggaatgtctttgagaggaaagtctat |
300 |
Q |
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| T |
38868440 |
tttcgaggaagatgttcacaaattagaacagttatatgcttttaccataatcaaaagtactttggaagactataggaatgtctttgagaggaaagtctat |
38868341 |
T |
|
| Q |
301 |
ataagactagaagataactttgacatattgaaggattcaaagccactagatttgaggccaggttaatttctgtggtgcagctgaatcatttgacatgatt |
400 |
Q |
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| T |
38868340 |
ataagactagaagataactttgacatattgaaggattcaaagccactagatttgagaccaggttaatttctgtggtgcagctgaatcatttggcatgatt |
38868241 |
T |
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| Q |
401 |
aagagccggcaagtatatacatgc |
424 |
Q |
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| T |
38868240 |
aagagccggcaagtatatacatgc |
38868217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 38806751 - 38806821
Alignment:
| Q |
132 |
aaagctaaacaaatcgaggttgctggatttgtcttggtgtacagttgaagaggactataccatgatcagttt |
203 |
Q |
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| T |
38806751 |
aaagctaaacaaattgaggtttctggatttgtctcggtgtacaatcgaagaggact-taccatgatcagttt |
38806821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 38849502 - 38849438
Alignment:
| Q |
132 |
aaagctaaacaaatcgaggttgctggatttgtcttggtgtacagttgaagaggactataccatga |
196 |
Q |
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|||||||||||||| |||||| |||||||||||| ||||| ||||||||||||| ||||||||| |
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| T |
38849502 |
aaagctaaacaaattcaggttgttggatttgtcttagtgtatagttgaagaggacaataccatga |
38849438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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