View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_24 (Length: 430)
Name: NF1519_low_24
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 96 - 416
Target Start/End: Complemental strand, 36272157 - 36271834
Alignment:
| Q |
96 |
aaaatgaagtagctatgggaagaggagaatatagtggttatggaggaggatgtggcggaggagaatatcaaatgcctcatatgagaggaggagaacaaga |
195 |
Q |
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| T |
36272157 |
aaaatgaagtagctatgggaagaggagaatatagtggttatggaggaggatgtggcggaggagaatatcaaatgcctcatatgagaggaggagaacaaga |
36272058 |
T |
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| Q |
196 |
aggctttgaaaatcaagggccctgggaatgtccataacaattagagatatgaatgcaagtgttgcgtcccataaagtatgtataagaaaaatatgcaatt |
295 |
Q |
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| T |
36272057 |
aggctttgaaaatcaagggccctgggaatgtccataacaaatagagatatgaatgcaagtgttgcgtcccataaagtatgtataagaaaaatatgcaatt |
36271958 |
T |
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| Q |
296 |
tatcttactccatgtctagtctttattaggatgaacttttttcacttaaattaaaatatattttattgatattcttcgaatg---taccatttatattat |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
36271957 |
tatcttactccatgtctagtctttattaggatgaacttttttcacttaaattaaaatatattttattgatattcttagaatgtactaccatttatattat |
36271858 |
T |
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| Q |
393 |
cacatataagaagtgccaccgttt |
416 |
Q |
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|||||||||||||||||||||||| |
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| T |
36271857 |
cacatataagaagtgccaccgttt |
36271834 |
T |
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