View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_25 (Length: 425)
Name: NF1519_low_25
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 9 - 370
Target Start/End: Complemental strand, 6133966 - 6133605
Alignment:
| Q |
9 |
acatcatcatacaatgaaccataaacattcacaaaatgccctaatgtctgaattttcaaattcaatgaatgaggtgaaccattagtaagaatctcaggaa |
108 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6133966 |
acatcatcatacaatgaaccataaacgttcacaaaatgccctaatgtctgaattttcaaattcaatgaatgaggtgaaccattagtaagaatctcaggaa |
6133867 |
T |
|
| Q |
109 |
gagtatacctcaaacatatcactgaagaagaagacatgtcatcaataagatgagaggaactaatcttcacacccgaaacgcgatccacacgaataaaccc |
208 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6133866 |
gagtatacctcaaacatatcattgaagaagaagacatgtcatctataagatgagaggaactaatcttcacacccgaaacgcgatccacacgaataaaccc |
6133767 |
T |
|
| Q |
209 |
tgattcaagaataaaagcatgaactgcaaataccagtagtttgaaatcgctaacgtcatcaccaagcgcttctctaagcacccttttcacaaaatcaggt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6133766 |
tgattcaagaataaaagcatgaactgcaaataccagtagtttgaaatcgctaacgtcatcaccaagcgcttctctaagcacccttttcacaaaatcaggt |
6133667 |
T |
|
| Q |
309 |
gttgattccattctaatatgatgatcagttcatgaaggtaagagtcaaagagaagcaatata |
370 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6133666 |
gttgattccattctaatatgatgatcagttcatgaaggtaagagtcaaagagaagcaatata |
6133605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 9 - 352
Target Start/End: Complemental strand, 20600146 - 20599803
Alignment:
| Q |
9 |
acatcatcatacaatgaaccataaacattcacaaaatgccctaatgtctgaattttcaaattcaatgaatgaggtgaaccattagtaagaatctcaggaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
20600146 |
acatcatcatacaatgaaccataaacattcacaaaatgccctaatgtctgaattttcaaattcaaagaatgagatgaaccattagtaagaatctcaggaa |
20600047 |
T |
|
| Q |
109 |
gagtatacctcaaacatatcactgaagaagaagacatgtcatcaataagatgagaggaactaatcttcacacccgaaacgcgatccacacgaataaaccc |
208 |
Q |
| |
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||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| || || ||| |||||| |||||||||||| |||||| |
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| T |
20600046 |
gagtatacctcaaggatatcattgaagaagaagacatgtcatcaataagatgagagatactgatagccatacctgaaacgtgatccacacgaacaaaccc |
20599947 |
T |
|
| Q |
209 |
tgattcaagaataaaagcatgaactgcaaataccagtagtttgaaatcgctaacgtcatcaccaagcgcttctctaagcacccttttcacaaaatcaggt |
308 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||| |||| |
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| T |
20599946 |
tgattcaagaataaaagcatgaacagcaaataccagtagtttgaaatcgctaacgtcgtcgccaagtgcttctctaagcacccttttcacaaaattaggt |
20599847 |
T |
|
| Q |
309 |
gttgattccattctaatatgatgatcagttcatgaaggtaagag |
352 |
Q |
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||||||||||||||||||| |||||| ||| |||| |||||||| |
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|
| T |
20599846 |
gttgattccattctaatataatgatcggttgatgatggtaagag |
20599803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 47944733 - 47944862
Alignment:
| Q |
10 |
catcatcatacaatgaaccataaacattcacaaaatgccctaatgtctgaattttcaaattcaatgaatgaggtgaaccattagtaagaatctcaggaag |
109 |
Q |
| |
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|||||||| ||||||||||||| ||||||||||||| |||||| |||||||||||||| ||| | ||||| ||||||||| ||||||||||||||||| |
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| T |
47944733 |
catcatcacacaatgaaccatagacattcacaaaattccctaaagtctgaattttcaatatcacagcatgagatgaaccattggtaagaatctcaggaag |
47944832 |
T |
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| Q |
110 |
agtatacctcaaacatatcactgaagaaga |
139 |
Q |
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| T |
47944833 |
agtatacctcaaagatatcattgatgaaga |
47944862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 132 - 308
Target Start/End: Original strand, 47944888 - 47945064
Alignment:
| Q |
132 |
gaagaagaagacatgtcatcaataagatgagaggaactaatcttcacacccgaaacgcgatccacacgaataaaccctgattcaagaataaaagcatgaa |
231 |
Q |
| |
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|||||||||||||| ||||||| ||||| |||| |||||||| || ||||||||| |||||||||| |||||| ||||||||||||| |||||||| |
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| T |
47944888 |
gaagaagaagacatatcatcaacaagattagagcaactaatcgccatacccgaaacctcgtccacacgaacaaacccagattcaagaataacagcatgaa |
47944987 |
T |
|
| Q |
232 |
ctgcaaataccagtagtttgaaatcgctaacgtcatcaccaagcgcttctctaagcacccttttcacaaaatcaggt |
308 |
Q |
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| ||||| |||| || || ||||| ||||| ||||||||||||||||| ||| ||||| ||||| ||||||||| |
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| T |
47944988 |
ccgcaaacaccaacagcttcaaatcactaacatcatcaccaagcgcttccttaataaccctcttcacgaaatcaggt |
47945064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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