View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_26 (Length: 424)
Name: NF1519_low_26
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_26 |
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| [»] scaffold0258 (1 HSPs) |
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Alignment Details
Target: scaffold0258 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: scaffold0258
Description:
Target: scaffold0258; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 375
Target Start/End: Original strand, 15894 - 16249
Alignment:
| Q |
20 |
atcactatcaagaacgtacagaacccgaaatacatatatgcaagtcagtccatatatgatactacctccggtccctataatatagactatatacacgtga |
119 |
Q |
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| T |
15894 |
atcactatcaagaacttacggaacccgaaataaatataagcaagtcagtccatatatgatactacctccggtccctataatatagactatatacacgtca |
15993 |
T |
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| Q |
120 |
gttattcaatgaacctaaaaagtgaatttttcttacaacagggactagagggagtatccgatatggattgacttgcatatatgcatttcggacacaatga |
219 |
Q |
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| T |
15994 |
gttattcaatgaacctaaaaagtgaatttttcttacaacagggactagagggagtatccgatatggattgacttgcatatatgcatttcggacacaatga |
16093 |
T |
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| Q |
220 |
gtttatgagaaaacaacattgaatttactttatgaagagatgagcaagaaggaaaacaccgtttgtgcttcctcagtctcatgaggacgcaatcacacac |
319 |
Q |
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| T |
16094 |
gtttatgagaaaacaacattgaatttactttatgaagagatgagcaagaaggaaaacaccgtttgtgcttcctcagtctcatgaggacgcaatcacacac |
16193 |
T |
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| Q |
320 |
aagggtctttcaattcatccttttctttaatagaaactagaaaaagaataattctt |
375 |
Q |
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| T |
16194 |
aagggtctttcaattcatccttttctttaatagaaactagaaaaagaataattctt |
16249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 11045722 - 11045671
Alignment:
| Q |
94 |
ctataatatagactatatacacgtgagttattcaatgaacctaaaaagtgaatt |
147 |
Q |
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| T |
11045722 |
ctataatatagactaaatata--ttagttattcaatgaacctaaaaagtgaatt |
11045671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 11047570 - 11047519
Alignment:
| Q |
94 |
ctataatatagactatatacacgtgagttattcaatgaacctaaaaagtgaatt |
147 |
Q |
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| T |
11047570 |
ctataatatagactaaatata--ttagttattcaatgaacctaaaaagtgaatt |
11047519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 147
Target Start/End: Complemental strand, 42896198 - 42896170
Alignment:
| Q |
119 |
agttattcaatgaacctaaaaagtgaatt |
147 |
Q |
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| T |
42896198 |
agttattcaatgaacctaaaaagtgaatt |
42896170 |
T |
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