View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_27 (Length: 418)
Name: NF1519_low_27
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 11 - 407
Target Start/End: Complemental strand, 182676 - 182285
Alignment:
| Q |
11 |
cagagaatgaaacaagtataccaagatgtccaaccatcataagagaaaccacttgaagaagatattgtgaaacagttacagctaccattggagctgccac |
110 |
Q |
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| T |
182676 |
cagagaatgaaacaagtataccaagatgtccaaccatcataagagaaaccacttgaagaagatattgtgaaacagttacagctaccattggagctgcaac |
182577 |
T |
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| Q |
111 |
gaaactcactttcttcaactcttgaacaaatgtactctcaatctcatcat---tctttcttatcaatggtgttgtcacctccttactcatctctctagag |
207 |
Q |
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| T |
182576 |
gaaactcactttcttcaactcttgaacaaatgtactctcaatctcatgatcactctttcttatcaatggtgttgtcacctccttactcatctctctagag |
182477 |
T |
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| Q |
208 |
ttgtttttcattaaatgtgatcactatgaatatgatatcagagatttatatataggagtgaaagagttttttctttcttcttctacctatatggaaagta |
307 |
Q |
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| T |
182476 |
ttgtttttcattaaatgtgatcactatgaatatgatatcagagatttatatataggagtgaaagagttgtttctttcttcttctacctatatggaaagta |
182377 |
T |
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| Q |
308 |
agtgtggttaatgttaatatttatggtcaaaaaccaagttgcatattatattaataataataaatttaaaattgtgcttctgcacacagaatgatgatga |
407 |
Q |
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| T |
182376 |
agtgtggttaatgttaatatttatggtcaaaaaccaagttgcatat--------taataataaatttaaaattgtgcttctgcacacagaatgaggatga |
182285 |
T |
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