View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_28 (Length: 416)
Name: NF1519_low_28
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 13 - 401
Target Start/End: Complemental strand, 4195899 - 4195511
Alignment:
| Q |
13 |
cagaaagattattcttgtgaagatcaagaatcccaagctgatgaagattcacaatactctcgggcaatgaagaattgaaccggttattaccacccgaaaa |
112 |
Q |
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| T |
4195899 |
cagaaagattattcttgtgaagatcaagaatcccaagctgatgaagattcacaatactctcgggcaatgaagaattaaaccggttattaccacccgaaaa |
4195800 |
T |
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| Q |
113 |
ttcctgaagattttccaacaatccaatctcttcaggaatcacaccagagaaattattattcgtcaaagtcaactgagacaaattcccagctccaccaata |
212 |
Q |
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| T |
4195799 |
ttcctgaagattttccaacaatccaatctcttcaggaatcacaccagagaaattattattcgtcaaagtcaactgagacaaattcccagctccaccaata |
4195700 |
T |
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| Q |
213 |
gtcttaccaattgaaccagaaaacaagttatcaacaagctcaagaagataaacatgcggcagaccccaaaaacccgccggaacttcacctgacaacttat |
312 |
Q |
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| T |
4195699 |
gtcttaccaattgaaccagaaaacaagttatcaacaagctcaagaagataaacatgcggcagaccccaaaaacccgccggaacttcacctgacaacttat |
4195600 |
T |
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| Q |
313 |
taaaacctaacctaacgcgcgtcaatgtccgacactcccctaaactcccaggaatctcgccagagaattcattatgtatcatcaaaagt |
401 |
Q |
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| T |
4195599 |
taaaacccaacctaacgcgcgtcaatgtccgacactcccctaaactccctggaatctcgccagagaattcattatgtatcatcaaaagt |
4195511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 337
Target Start/End: Original strand, 34923689 - 34923831
Alignment:
| Q |
195 |
ttcccagctccaccaatagtcttaccaattgaaccagaaaacaagttatcaacaagctcaagaagataaacatgcggcagaccccaaaaacccgccggaa |
294 |
Q |
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| T |
34923689 |
ttccctgctccagcaatagtcttcgaaatagaacccgaaaacgagttatgagcaagctcaagaagatacacatgaggaagaccccagatacccgccggaa |
34923788 |
T |
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| Q |
295 |
cttcacctgacaacttattaaaacctaacctaacgcgcgtcaa |
337 |
Q |
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| T |
34923789 |
cctcaccggaaaaccgattaaaacccaatctcacacgcgtcaa |
34923831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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