View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_3 (Length: 744)
Name: NF1519_low_3
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 658; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 18 - 736
Target Start/End: Original strand, 39179771 - 39180490
Alignment:
| Q |
18 |
acatttaacttacccaccaagttattattagatcttatcttatgaagttgacttgagattagcatagcagaaaaagtcttgtgcttacaaaggaaaaaac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39179771 |
acatttaacttacccaccaagttattattagatcttatcttatgaagctgacttgagattagcatagcagaaaaagtcttgtgcttacaaaggaaaaaac |
39179870 |
T |
|
| Q |
118 |
aatactcttagttaaatttgctttcagacctttcactgagtatatttatatatatgcttcaatccctttctagtcactggtcatgtcaaattctttggct |
217 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39179871 |
aatactctgagttaaatttgctttcagacctttcactgagtatatttatatatatgcttcaatccctttctagtcactggtcatgtcaaattctttggct |
39179970 |
T |
|
| Q |
218 |
cttctctcttgtctttatctttgtttcatgttcattgtcactttcagcataagcacctctttattttcaacttgactttgaaaccaaaatatgaaggttg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39179971 |
cttctctcttgtctttatctttgtttcatgttcattggcactttcagcataagcacctctttattttcaacttgactttgaaaccaaaatatgaaggttg |
39180070 |
T |
|
| Q |
318 |
taattgccgaaagcattttttatgctaaatagataggtactagtatccatatatgtacacgtggcctctaacaaagatatatgacagtttaccgttacta |
417 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39180071 |
taattgccaaaagcattttttatgctaaatagataggtactagtatccatatatgtacacgtggcctctaacaaagatatatgacagtttaccgttacta |
39180170 |
T |
|
| Q |
418 |
ttcattacttattaccagtaattaattagaataacagcatgtcaccattatatcataagcagccggcaggcacaacatttacagaatatgcttgtaattg |
517 |
Q |
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| T |
39180171 |
ttcattacttattaccagtaattaattagaataacagcatgtcaccattatatcataagcagccggcaggcacaacatttacagaatatgcttgtaattg |
39180270 |
T |
|
| Q |
518 |
-tttcacaatttttaacgtggaaacaaaatttaatagaaaaagtagatataaaggaatgtaagacattttcaacatctgattaattatatagaaaagtga |
616 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39180271 |
ttttcacaattttgaacgtggaaacaaaatttaatagaaaaagtagatataaaggaatgtaagactttttcaacatctgattaattatatagaaaagtga |
39180370 |
T |
|
| Q |
617 |
gaataaaataaaataagtcactaatannnnnnnnnngataaaataaaaattaaagtgaactatatatttctacagttcagtttccggcgctgctactata |
716 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39180371 |
gaataaaataaaataagtcactaatattttttttttgataaaataaaaattaaagtgaactatatatttctacagttcagtttccggcgctgctactata |
39180470 |
T |
|
| Q |
717 |
gcttttctgtctttcatctc |
736 |
Q |
| |
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|||||||||||||||||||| |
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| T |
39180471 |
gcttttctgtctttcatctc |
39180490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 39221228 - 39221563
Alignment:
| Q |
18 |
acatttaacttacccaccaagttattattagatcttatcttatgaagttgacttgagattagcatagcagaaaaagtcttgtgcttacaaaggaaaaaac |
117 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39221228 |
acatttaacttatccaccaagttattattagatct-----tatgaagctgacttgagattagcatagcagaaaaagtcttgtgcttatgaaggaaaaaac |
39221322 |
T |
|
| Q |
118 |
aatactcttagttaaatttgctttcagacctttcactgagtatatttatatatatgcttcaatccctttctagtcactggtcatgtcaaattctttggct |
217 |
Q |
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||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39221323 |
aattttgttggttaaatttgctttcagacctttcactgagtatatttatatatatgcttcaatccctttctagtcactggtcatctcaaattctttggct |
39221422 |
T |
|
| Q |
218 |
cttctctcttgtctttatctttgtttcatgttcattgtcactttcagcataagcacctctttattttcaacttgactttgaaaccaaaatatgaaggttg |
317 |
Q |
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|||||||||||||| ||| ||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39221423 |
cttctctcttgtctctatatttgtttcatgttcattttcactttcagcaccagtacctctttattttcaacttgactttgaaaccaaaatatgaaagttg |
39221522 |
T |
|
| Q |
318 |
taattgccgaaagcattttttatgctaaatagataggtactagtatccatat |
369 |
Q |
| |
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| | ||||||||||| |||||||||||||||||||||||||| |
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|
| T |
39221523 |
tca-----------attttttatgccaaatagataggtactagtatccatat |
39221563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 494 - 733
Target Start/End: Original strand, 39221658 - 39221886
Alignment:
| Q |
494 |
atttacagaatatgcttgtaattgtttcacaatttttaacgtggaaacaaaatttaatagaaaaagtagatataaa--ggaatgtaagacattttcaaca |
591 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| || ||||||| || ||||||||||||| |||||| ||| |||| |||| || |||| |||| |
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| T |
39221658 |
atttacagaatatgcttgtaactgtttcacaatttt-aatgtggaaa--aagtttaatagaaaaaatagataaaaaaaggaaagtaaaacttttttaaca |
39221754 |
T |
|
| Q |
592 |
tctgattaattatatagaaaagtgagaataaaataaaataagtcactaatannnnnnnnnngataaaataaaaattaaagtgaactatatatttctacag |
691 |
Q |
| |
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|| ||| | |||||||||||||||||||||| |||||||||| || | || | ||||||||||||||||||||| ||||||| |
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| T |
39221755 |
tcagat-------acagaaaagtgagaataaaataaa-taagtcactagtaattgttttaataaaataaaaaaattaaagtgaactatat---tctacag |
39221843 |
T |
|
| Q |
692 |
ttcagtttccggcg-ctgctactatagcttttctgtctttcat |
733 |
Q |
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|||||||||||| | |||||||||||||||||| ||||||||| |
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| T |
39221844 |
ttcagtttccggtggctgctactatagcttttcagtctttcat |
39221886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 39192415 - 39192513
Alignment:
| Q |
18 |
acatttaacttacccaccaagttattattagatcttatcttatgaagttgacttgagattagcatagcagaaaaagtcttgtgcttacaaaggaaaaaac |
117 |
Q |
| |
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||||||||||||| || ||||||||||||||||||| | |||| ||||||||||||||||||||||||||| | |||||||||| |||||||| |
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| T |
39192415 |
acatttaacttactcatcaagttattattagatcttgt-----gaagcaaacttgagattagcatagcagaaaaagttatatgcttacaaaagaaaaaac |
39192509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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