View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_31 (Length: 401)
Name: NF1519_low_31
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 386
Target Start/End: Original strand, 2361663 - 2362038
Alignment:
| Q |
11 |
gttagcaccctatggttcttgttggcgccaagtaaggaagattgcaacttcagagatcctcagccataggcatgtcgaacaacaacaatattttcatacc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2361663 |
gttagcaccctatggttcttgttggcgccaagtaaggaagattgcaacttcagagatcctcagccataggcatgtcgaacaacaacaatattttcatacc |
2361762 |
T |
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| Q |
111 |
tcagaagttcaggcgtggattaaagagctcttcaatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttggtggagttaaagcaatggttta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2361763 |
tcagaagttcaggcgtggattaaagagctcttcaatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttggtggagttaaagcaatggttta |
2361862 |
T |
|
| Q |
211 |
ctcaattaagtttcaacattgttcttccaatgctggttgggaaacgatattttggtgctacgaatgcggcgaacgaggaagaagcgcaaagatgtataaa |
310 |
Q |
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| T |
2361863 |
ctcaattaagtttcaacattgttcttccagtgctggttgggaaacgatattttggtgctacgaatgtggcgaacgaggaagaagcgcaaagatgtataaa |
2361962 |
T |
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| Q |
311 |
agctttacaagagttgatgcgattgttaggggtgttcacaataggagatgccattccttttctaaaatggtttgat |
386 |
Q |
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| T |
2361963 |
agctttacaagagttgatgcgattgttaggggtgttcacaataggagatgccattccttttctaaaatggtttgat |
2362038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 43 - 386
Target Start/End: Original strand, 2366299 - 2366645
Alignment:
| Q |
43 |
taaggaagattgcaacttcagagatcctcagccataggcatgtcgaacaacaacaatattttcatacctcagaagttcaggcgtggattaaagagctctt |
142 |
Q |
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| T |
2366299 |
taagaaagatagcaacttcagaaatgctcaccaatcggcgtgttgaacaacaacaacattttcatatcttagaagtgcaacggtggattaaagagctctt |
2366398 |
T |
|
| Q |
143 |
caatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttggtggagttaaagcaatggtttactcaattaagtttcaacattgttcttccaatg |
242 |
Q |
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| |||||||||||||||||||||| |||||||||||||||| |||||||||| | ||||||||||| |||||||| |||||||| ||||||||||||||| |
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| T |
2366399 |
cgatgtttggtttagtaaaaagaatgagtcatcaaactacgtgttggtggagatgaagcaatggttaactcaattgagtttcaatattgttcttccaatg |
2366498 |
T |
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| Q |
243 |
ctggttgggaaacgatattttggtg---ctacgaatgcggcgaacgaggaagaagcgcaaagatgtataaaagctttacaagagttgatgcgattgttag |
339 |
Q |
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| T |
2366499 |
ctggttgggaaacaatattttggtcatcctacgaatgtgatcaacgaggaagaagggcaaagatgtgtaaaagctttaaaaaagttgatgcatttgttag |
2366598 |
T |
|
| Q |
340 |
gggtgttcacaataggagatgccattccttttctaaaatggtttgat |
386 |
Q |
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| T |
2366599 |
gggtgttcacaataggagatgccattcctttactaaaatggtttgat |
2366645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 266
Target Start/End: Original strand, 2306125 - 2306220
Alignment:
| Q |
171 |
tcatcaaactacgcgttggtggagttaaagcaatggtttactcaattaagtttcaacattgttcttccaatgctggttgggaaacgatattttggt |
266 |
Q |
| |
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||||||||||||| ||| || ||||| | ||||||||||| || |||| |||||||| ||||||| |||| | ||||||||| ||||||||||| |
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| T |
2306125 |
tcatcaaactacgtgttagtagagttggatcaatggtttacacatttaacattcaacatggttcttcgaatggttgttgggaaaagatattttggt |
2306220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 276
Target Start/End: Original strand, 2356163 - 2356239
Alignment:
| Q |
200 |
gcaatggtttactcaattaagtttcaacattgttcttccaatgctggttgggaaacgatattttggtgctacgaatg |
276 |
Q |
| |
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||||||||||| | | || | |||||||||||| ||||| ||| | |||||||| |||||||||||||||| ||||| |
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| T |
2356163 |
gcaatggtttattgagttgaatttcaacattgtacttccgatgattgttgggaagcgatattttggtgctatgaatg |
2356239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 2349447 - 2349492
Alignment:
| Q |
129 |
attaaagagctcttcaatgtttggtttagtaaaaagaacgagtcat |
174 |
Q |
| |
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||||||||||||||| ||||||||| ||| |||||||| ||||||| |
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| T |
2349447 |
attaaagagctcttcgatgtttggtatagcaaaaagaaagagtcat |
2349492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 129 - 386
Target Start/End: Original strand, 41341688 - 41341946
Alignment:
| Q |
129 |
attaaagagctcttcaatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttggtggagttaaagcaatggtttactcaattaagtttcaaca |
228 |
Q |
| |
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||||||||| ||| ||||||||||| ||||| | ||||| ||||||||||||| | ||||||||| || || ||||| ||||||||||| ||| |||| |
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| T |
41341688 |
attaaagaggtctacaatgtttggtgtagtagagagaacaagtcatcaaactatgtgttggtggacttgaaacaatgttttactcaattgagtaaaaaca |
41341787 |
T |
|
| Q |
229 |
ttgttcttccaatgctggttgggaaacgatattttggtgctacgaatgcggcgaacgaggaagaagcgcaaagatgtataaaagctttacaagagttgat |
328 |
Q |
| |
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|||||||||||||| |||||||||| ||||||||||| |||||||||| || || ||||||||| |||| |||||| |||||||| ||||| || | |
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| T |
41341788 |
ttgttcttccaatgttggttgggaagcgatattttggagctacgaatgtggttgacaaggaagaagaacaaaaatgtatgaaagctttggaagagatgtt |
41341887 |
T |
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| Q |
329 |
gcgattgttaggggtgttcacaataggagatgc-cattccttttctaaaatggtttgat |
386 |
Q |
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| T |
41341888 |
acgtttgttaggggtgttcacggtgggtggtgctcttcccttttctaaaatggtttgat |
41341946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 128 - 386
Target Start/End: Original strand, 4303542 - 4303803
Alignment:
| Q |
128 |
gattaaagagctcttcaatgtttggtttagtaaa---aagaacgagtcatcaaactacgcgttggtggagttaaagcaatggtttactcaattaagtttc |
224 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||||| || |||||||||||||| || | |||||||| | |||||||||||||||||||| | | | |
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| T |
4303542 |
gattaaagagctctacaatgtttggtgtcgtaaagagaacaacgagtcatcaaaatatttgatggtggaggtcaagcaatggtttactcaattgaatata |
4303641 |
T |
|
| Q |
225 |
aacattgttcttccaatgctggttgggaaacgatattttggtgctacgaatgcggcgaacgaggaagaagcgcaaagatgtataaaagctttacaagagt |
324 |
Q |
| |
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|| | ||||||||| || ||||||| || |||||||| ||| |||| |||| || ||||||||| ||| |||| |||||||| || ||||| |
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| T |
4303642 |
gacttggttcttccattgttggttggaaagcgatatttcggttctacaaatgttatcgacaaggaagaagtagaaatatgtgtaaaagctataaaagaga |
4303741 |
T |
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| Q |
325 |
tgatgcgattgttaggggtgttcacaataggagatgccattccttttctaaaatggtttgat |
386 |
Q |
| |
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|| |||| ||| | |||||||||||| | |||||||| |||||||| |||||||||||||| |
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| T |
4303742 |
tgctgcgtttgatgggggtgttcacagtgggagatgctcttccttttttaaaatggtttgat |
4303803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 5805897 - 5805808
Alignment:
| Q |
128 |
gattaaagagctcttcaatgtttggtttagtaaaaagaacgagt------catcaaactacgcgttggtggagttaaagcaatggtttac |
211 |
Q |
| |
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||||||||||||||||||| |||||| ||| ||||||||||| | |||||||||| | ||||||||| || |||||||||||||| |
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| T |
5805897 |
gattaaagagctcttcaatatttggtctagaaaaaagaacgaatcaaatccatcaaactatgtgttggtggacttgaagcaatggtttac |
5805808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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