View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_33 (Length: 397)
Name: NF1519_low_33
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 290
Target Start/End: Complemental strand, 4379208 - 4378931
Alignment:
| Q |
13 |
atactaaatggatggaaattataattaagaagtaggagnnnnnnnnnnnnnnnnngtgcaaaacgtgcacacgtaaatgtacttttgacaacaataataa |
112 |
Q |
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| T |
4379208 |
atactaaatggatggaaattataattaagaagtaggagaaaaaaccctaaaaaaagtgcaaaacgtgcacacgtaaatgtacttttgacaacaataataa |
4379109 |
T |
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| Q |
113 |
tgaaggaaaactagctataaatccgtactaaacatatccataaagatgaaggcattgctttgctgatacccattctacctttacctgttattgtctgtat |
212 |
Q |
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| T |
4379108 |
tgaagaaaaactagctataaatccgtactaaacatatccataaagatgaaggcattgctttgctgatacccattctacctttacctgttactgtctgtat |
4379009 |
T |
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| Q |
213 |
gatgccattaatttattacttttacttctgtacacaagacagggccttgatcctctgctataaagtccaccatgcacg |
290 |
Q |
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| T |
4379008 |
gatgccattaatttattacttttacttctgtacagaagacagggccttgatcctctgctataaagtccaccatgcacg |
4378931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 381
Target Start/End: Complemental strand, 4378869 - 4378840
Alignment:
| Q |
352 |
gttcccaccgttctgtctgcaccaaaaatg |
381 |
Q |
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| T |
4378869 |
gttcccaccgttctgtctgcaccaaaaatg |
4378840 |
T |
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