View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1519_low_36 (Length: 391)
Name: NF1519_low_36
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_36 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 378
Target Start/End: Original strand, 11321363 - 11321726
Alignment:
| Q |
13 |
tcaattataaggcagagcaaaatcgtgaaatctcttaaacatatacgatttcaagcagattttttgtagtttaggattctactaagcattcaaatcggta |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11321363 |
tcaattataaggcagagcaaaatcgtgaaatctcttaaacatatacgattttgagcagattttgtgtagtttaggattctactaagcatttaaatcggta |
11321462 |
T |
|
| Q |
113 |
aggcagaacaaaatcg--------tagaattttaggattctaatcgggattttaacaactatgaacataatacttttcaacaaaacatattaattccaac |
204 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11321463 |
aggcagagcaaaatcgcaaaatggtagaattttaggattcaattcgggattttaacaactatgaacataatacttttcaacaaa-catattaattccaac |
11321561 |
T |
|
| Q |
205 |
tgaactttctgtgcacattatagagaagaaagaatccaacatctatatcacggttttatcaattgtatcacacaattggtcaataccaaaactggttaca |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||| |
|
|
| T |
11321562 |
tgaactttctgtgcacattatagagaagaaagaatccaacatctatatcacggttttatcaattgtattgcacaattgatcgataccaaaactggttaca |
11321661 |
T |
|
| Q |
305 |
ggtacgatagccgctgagagggc-gagtttggccatttcttcgggaaagactctcttaaccgcagccttcatctc |
378 |
Q |
| |
|
||| |||||||| |||||| |||||||||||||||||||||| |||||| ||||| |||||||| |
|
|
| T |
11321662 |
ggt----------tggagagggctgagtttagccatttcttcgggaaagactcccttaacggcagcattcatctc |
11321726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 9720400 - 9720514
Alignment:
| Q |
49 |
aaacatatacgatttcaagcagattttttgtagtttaggattctactaagcattcaaatcggtaaggcagaacaaaatcgtagaattttaggattctaat |
148 |
Q |
| |
|
||||||| | || ||||| | ||||||| ||||||||||||||||||| |||| |||||||||||||| |||||||||| |||| || ||||| || |
|
|
| T |
9720400 |
aaacatagatgacttcaaacggatttttcatagtttaggattctactaaattttcagatcggtaaggcagagaaaaatcgtaggatttcagtattctgat |
9720499 |
T |
|
| Q |
149 |
cgggattttaacaac |
163 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
9720500 |
cgggattgtaacaac |
9720514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 27676992 - 27677040
Alignment:
| Q |
79 |
tagtttaggattctactaagcattcaaatcggtaaggcagaacaaaatc |
127 |
Q |
| |
|
||||||||||||||||| || |||| |||||||||||||| ||||||| |
|
|
| T |
27676992 |
tagtttaggattctactcaggattctgatcggtaaggcagagcaaaatc |
27677040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University