View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1519_low_38 (Length: 388)

Name: NF1519_low_38
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1519_low_38
NF1519_low_38
[»] chr3 (8 HSPs)
chr3 (72-275)||(13229854-13230057)
chr3 (279-372)||(3225014-3225107)
chr3 (279-372)||(1311753-1311846)
chr3 (279-372)||(11034620-11034713)
chr3 (279-372)||(19933010-19933103)
chr3 (278-339)||(19933103-19933165)
chr3 (278-336)||(11034561-11034620)
chr3 (33-73)||(19932955-19932995)
[»] scaffold0002 (1 HSPs)
scaffold0002 (72-275)||(194151-194354)
[»] chr7 (23 HSPs)
chr7 (161-275)||(10411507-10411621)
chr7 (279-366)||(36018224-36018311)
chr7 (279-372)||(12502789-12502882)
chr7 (289-372)||(11283085-11283168)
chr7 (290-372)||(12528419-12528501)
chr7 (279-372)||(16421925-16422018)
chr7 (291-366)||(26262903-26262978)
chr7 (279-366)||(28393263-28393350)
chr7 (279-371)||(48186354-48186446)
chr7 (297-372)||(21267912-21267987)
chr7 (279-372)||(16484235-16484328)
chr7 (16-73)||(11283193-11283250)
chr7 (279-360)||(28384347-28384428)
chr7 (17-73)||(12528527-12528583)
chr7 (17-73)||(36018153-36018209)
chr7 (26-73)||(26263005-26263052)
chr7 (278-339)||(11283023-11283085)
chr7 (278-339)||(12528357-12528419)
chr7 (278-339)||(16422018-16422080)
chr7 (278-339)||(26262835-26262897)
chr7 (279-339)||(48186291-48186352)
chr7 (17-73)||(12502897-12502953)
chr7 (33-73)||(16421870-16421910)
[»] chr8 (7 HSPs)
chr8 (279-372)||(5536789-5536882)
chr8 (280-366)||(6818824-6818910)
chr8 (14-73)||(6818749-6818808)
chr8 (279-372)||(44669159-44669252)
chr8 (284-372)||(3896998-3897086)
chr8 (26-73)||(5536897-5536944)
chr8 (278-339)||(44669252-44669314)
[»] chr6 (11 HSPs)
chr6 (279-372)||(3510110-3510203)
chr6 (286-366)||(21441880-21441960)
chr6 (279-372)||(24540920-24541013)
chr6 (307-366)||(15278147-15278206)
chr6 (278-339)||(34518338-34518400)
chr6 (301-358)||(34518414-34518471)
chr6 (307-358)||(34514465-34514516)
chr6 (278-339)||(3510203-3510265)
chr6 (278-339)||(24541013-24541075)
chr6 (33-73)||(3510055-3510095)
chr6 (33-73)||(15278063-15278103)
[»] chr2 (5 HSPs)
chr2 (279-372)||(2039278-2039371)
chr2 (279-372)||(29962758-29962851)
chr2 (286-339)||(2039379-2039433)
chr2 (33-73)||(2039223-2039263)
chr2 (33-73)||(29962866-29962906)
[»] chr1 (5 HSPs)
chr1 (279-372)||(18153672-18153765)
chr1 (279-372)||(18902241-18902334)
chr1 (17-73)||(18153601-18153657)
chr1 (278-339)||(18153765-18153827)
chr1 (278-339)||(18902334-18902396)
[»] scaffold0003 (3 HSPs)
scaffold0003 (279-372)||(10637-10730)
scaffold0003 (278-339)||(10730-10792)
scaffold0003 (33-73)||(10582-10622)
[»] chr4 (9 HSPs)
chr4 (279-372)||(15426214-15426307)
chr4 (279-366)||(28654140-28654227)
chr4 (279-372)||(15419197-15419290)
chr4 (279-372)||(52945117-52945211)
chr4 (17-73)||(28654242-28654298)
chr4 (25-73)||(52945054-52945102)
chr4 (278-339)||(52945211-52945273)
chr4 (278-339)||(15419290-15419352)
chr4 (278-339)||(15426307-15426369)
[»] scaffold0172 (3 HSPs)
scaffold0172 (297-372)||(34347-34422)
scaffold0172 (278-339)||(34285-34347)
scaffold0172 (33-73)||(34455-34495)
[»] scaffold0655 (1 HSPs)
scaffold0655 (279-372)||(7827-7920)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 72 - 275
Target Start/End: Original strand, 13229854 - 13230057
Alignment:
Q  72 ttttgcttgcattgtgttatttggtctacatactggaactgataacattcgagattatgcaggattatacacaaaagatccttttttgactctctcttta 171  Q
    ||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13229854 ttttgcttgcattgtgttatttggtctacgtaccggaaccgataacattcgagattatgcaggattatacacaaaagatccttttttggctctctcttta 13229953  T
Q  172 gccccatgtctattatccttaggaggtcttcctccactagcaggttttttcggaaaacttcatttattctggtgttgatggcaagcaggcctatatttct 271  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13229954 gccctatgtctattatccttaggaggtcttcctccactagcaggttttttcggaaaacttcatttattctggtgtggatggcaagcaggcctatatttct 13230053  T
Q  272 tggt 275  Q
    ||||    
T  13230054 tggt 13230057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 279 - 372
Target Start/End: Original strand, 3225014 - 3225107
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    |||| ||||||| |||  ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  3225014 aatgcccaatggcggggcactgaccatcgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattagatgattcagaat 3225107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 372
Target Start/End: Original strand, 1311753 - 1311846
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    |||| |||||||||||  | ||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  1311753 aatgcccaatggtggggcattgatcatcgagttttaggagttactacccaacggtggggtagtggcgattcatatgcattaggtgattcagaat 1311846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 372
Target Start/End: Complemental strand, 11034713 - 11034620
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    |||| |||| |||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||  ||||| |||||    
T  11034713 aatgcccaacggtggggtactgaacatcgagttttaggagttattacccaatggtggggtagtgacaattcatatgcattaaatgattcagaat 11034620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 372
Target Start/End: Original strand, 19933010 - 19933103
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    |||| ||||||||||| |||||| ||| ||||||||||||||| ||| |||||||||||||||| | ||||||||||||||||||||| |||||    
T  19933010 aatgcccaatggtggggtactgaccatcgagttttaggagttactactcaacggtggggtagtggcaattcatatgcattaggtgattcagaat 19933103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 19933103 - 19933165
Alignment:
Q  278 taatgtccaatggtgggatactgaacattgagtttt-aggagttattacccaacggtggggta 339  Q
    ||||| |||||||||||||||||||||| || |||| |||||||||||||||| |||||||||    
T  19933103 taatgcccaatggtgggatactgaacatcgaatttttaggagttattacccaatggtggggta 19933165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 11034620 - 11034561
Alignment:
Q  278 taatgtccaatggtgggatactgaacattgagtttt-aggagttattacccaacggtggg 336  Q
    ||||| ||||||||||| |||||||||| || |||| |||||||||||||||| ||||||    
T  11034620 taatgcccaatggtggggtactgaacatcgaatttttaggagttattacccaatggtggg 11034561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 19932955 - 19932995
Alignment:
Q  33 attatccaatggtggggtatttatggagacattcatgcatt 73  Q
    |||| |||| ||||||||||||| |||||||||||||||||    
T  19932955 attacccaacggtggggtatttacggagacattcatgcatt 19932995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 72 - 275
Target Start/End: Original strand, 194151 - 194354
Alignment:
Q  72 ttttgcttgcattgtgttatttggtctacatactggaactgataacattcgagattatgcaggattatacacaaaagatccttttttgactctctcttta 171  Q
    ||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||    
T  194151 ttttgcttgcattgtattatttggtctacgtaccggaactgataacattcgagattatgcaggattatacattaaagatccttttttggctctctcttta 194250  T
Q  172 gccccatgtctattatccttaggaggtcttcctccactagcaggttttttcggaaaacttcatttattctggtgttgatggcaagcaggcctatatttct 271  Q
    |||| |||||| |||||| ||||||| |||||||||||||||||||| |||||||||||  || ||||||||||| ||||||||||||||||||||||||    
T  194251 gccctatgtctcttatccctaggaggccttcctccactagcaggtttcttcggaaaactctatctattctggtgtggatggcaagcaggcctatatttct 194350  T
Q  272 tggt 275  Q
    ||||    
T  194351 tggt 194354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 8e-37; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 161 - 275
Target Start/End: Original strand, 10411507 - 10411621
Alignment:
Q  161 ctctctctttagccccatgtctattatccttaggaggtcttcctccactagcaggttttttcggaaaacttcatttattctggtgttgatggcaagcagg 260  Q
    ||||||||||||||| |||| ||||||| |||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||     
T  10411507 ctctctctttagccctatgtttattatcgttaggatgtcttcctccactatcaggttttttctgaaaacttcatttattctggtgtggatggcaagcaga 10411606  T
Q  261 cctatatttcttggt 275  Q
    ||||||||| |||||    
T  10411607 cctatatttattggt 10411621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 279 - 366
Target Start/End: Original strand, 36018224 - 36018311
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatt 366  Q
    ||||||||| |||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  36018224 aatgtccaacggtggggtactgaacatcgagttttaggagttattacccaatggtggggtagtgacgattcatatgcattagatgatt 36018311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 279 - 372
Target Start/End: Complemental strand, 12502882 - 12502789
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    |||| |||| |||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||    
T  12502882 aatgcccaacggtggggtactgaacatcgagttttaggagttattacccaatggtggggtagtgacgattcatatgcattagatgattcagaat 12502789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 289 - 372
Target Start/End: Complemental strand, 11283168 - 11283085
Alignment:
Q  289 ggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    |||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  11283168 ggtggggtactaaacatcgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattagatgattcagaat 11283085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 290 - 372
Target Start/End: Complemental strand, 12528501 - 12528419
Alignment:
Q  290 gtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    ||||| ||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||    
T  12528501 gtggggtaccgaacatcgagttttaggagttattacccaatggtggggtagtgacgattcatatgcattagatgattcagaat 12528419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 372
Target Start/End: Original strand, 16421925 - 16422018
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    ||||||||||||||||  ||||| ||| ||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||| |||||    
T  16421925 aatgtccaatggtggggcactgaccatcgagttttaggagttactacccaacggtgggatagtggcgattcatatgaattaggtgattcagaat 16422018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 291 - 366
Target Start/End: Complemental strand, 26262978 - 26262903
Alignment:
Q  291 tgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatt 366  Q
    |||| |||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||    
T  26262978 tggggtactgaacatcgagttttaggagttattacccaatggtgggatagtgacgattcatatgcattagatgatt 26262903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 279 - 366
Target Start/End: Original strand, 28393263 - 28393350
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatt 366  Q
    |||| |||||||||||  ||||| ||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||    
T  28393263 aatgcccaatggtggggcactgaccatcgagttttaggagttattacccaacggtggggtagtagcgattcatatgcattagatgatt 28393350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 279 - 371
Target Start/End: Complemental strand, 48186446 - 48186354
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaa 371  Q
    |||| |||||||||||  ||||| ||| ||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| ||||| ||||    
T  48186446 aatgcccaatggtggggcactgaccatcgagttttaggagttactacccaatggtggtgtagtgacgattcatatgcattagatgattcagaa 48186354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 372
Target Start/End: Complemental strand, 21267987 - 21267912
Alignment:
Q  297 actgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    ||||| ||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| |||||    
T  21267987 actgaccatcgagttttaggagttactacccaatggtggggtagtgacgattcatatgcattagatgattcagaat 21267912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 372
Target Start/End: Original strand, 16484235 - 16484328
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    |||| |||||||||||  ||||| ||  ||||||||||||||| |||||||||||| ||||||| ||||||||||||| ||||||||| |||||    
T  16484235 aatgcccaatggtggggcactgatcaccgagttttaggagttactacccaacggtgaggtagtggcgattcatatgcactaggtgattcagaat 16484328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 11283250 - 11283193
Alignment:
Q  16 tttagagttgaggagttattatccaatggtggggtatttatggagacattcatgcatt 73  Q
    |||||| || ||||||||||| |||||||||||||||||| |||||||||||||||||    
T  11283250 tttagaattaaggagttattacccaatggtggggtatttacggagacattcatgcatt 11283193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 279 - 360
Target Start/End: Original strand, 28384347 - 28384428
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattag 360  Q
    |||| |||||||||||  ||||| ||| ||||||||||| |||||||||| ||||||||| ||  |||||||||||||||||    
T  28384347 aatgcccaatggtggggcactgaccatcgagttttaggatttattacccagcggtggggtggtagcgattcatatgcattag 28384428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 12528583 - 12528527
Alignment:
Q  17 ttagagttgaggagttattatccaatggtggggtatttatggagacattcatgcatt 73  Q
    ||||| || ||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  12528583 ttagatttaaggagttgttacccaatggtggggtatttacggagacattcatgcatt 12528527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 36018153 - 36018209
Alignment:
Q  17 ttagagttgaggagttattatccaatggtggggtatttatggagacattcatgcatt 73  Q
    ||||| || |||||||||||| |||||||||||||||||  ||||||||||||||||    
T  36018153 ttagatttaaggagttattattcaatggtggggtatttacagagacattcatgcatt 36018209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 26263052 - 26263005
Alignment:
Q  26 aggagttattatccaatggtggggtatttatggagacattcatgcatt 73  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||||||    
T  26263052 aggagttattacccaatggtggggtatttaccgagacattcatgcatt 26263005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 11283085 - 11283023
Alignment:
Q  278 taatgtccaatggtgggatactgaacattg-agttttaggagttattacccaacggtggggta 339  Q
    ||||||||||||||||| |||||||||| | | ||||||| |||||||||||| |||||||||    
T  11283085 taatgtccaatggtggggtactgaacatcgaatttttaggtgttattacccaatggtggggta 11283023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 12528419 - 12528357
Alignment:
Q  278 taatgtccaatggtgggatactgaacattg-agttttaggagttattacccaacggtggggta 339  Q
    ||||||||||||||||| ||||||| |||| | ||||||||||||||| |||| |||||||||    
T  12528419 taatgtccaatggtggggtactgaaaattgaatttttaggagttattatccaatggtggggta 12528357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 16422018 - 16422080
Alignment:
Q  278 taatgtccaatggtgggatactgaacattgagtttt-aggagttattacccaacggtggggta 339  Q
    ||||| ||||||||||| |||||||||| || |||| |||||||||||||||| |||||||||    
T  16422018 taatgcccaatggtggggtactgaacatcgaatttttaggagttattacccaatggtggggta 16422080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 26262897 - 26262835
Alignment:
Q  278 taatgtccaatggtgggatactgaacattgagtttt-aggagttattacccaacggtggggta 339  Q
    ||||| ||||||||||| ||||||||||  | |||| |||||||||||||||| |||||||||    
T  26262897 taatgcccaatggtggggtactgaacatccaatttttaggagttattacccaatggtggggta 26262835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 48186352 - 48186291
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagtttt-aggagttattacccaacggtggggta 339  Q
    |||| |||||| |||| |||||||||| || |||| |||||||||||||||| |||||||||    
T  48186352 aatgcccaatgatggggtactgaacatcgaatttttaggagttattacccaatggtggggta 48186291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 12502953 - 12502897
Alignment:
Q  17 ttagagttgaggagttattatccaatggtggggtatttatggagacattcatgcatt 73  Q
    ||||| || ||||||| |||  |||||||| |||||||| |||||||||||||||||    
T  12502953 ttagatttaaggagttgttactcaatggtgaggtatttacggagacattcatgcatt 12502897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 16421870 - 16421910
Alignment:
Q  33 attatccaatggtggggtatttatggagacattcatgcatt 73  Q
    |||| |||| ||||||||||||| |||||||||||||||||    
T  16421870 attacccaacggtggggtatttacggagacattcatgcatt 16421910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 279 - 372
Target Start/End: Complemental strand, 5536882 - 5536789
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    |||| ||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||    
T  5536882 aatgcccaatggtggggtactgaacatcgagttttaggagttattacccaatggtggggtagtgacgattcatatgcattagatgattcagaat 5536789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 280 - 366
Target Start/End: Original strand, 6818824 - 6818910
Alignment:
Q  280 atgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatt 366  Q
    ||||||||||||||| ||| |||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  6818824 atgtccaatggtggggtaccgaacatcgagttttaggagttattacccaatgatggggtagtgacgattcatatgcattaggtgatt 6818910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 6818749 - 6818808
Alignment:
Q  14 actttagagttgaggagttattatccaatggtggggtatttatggagacattcatgcatt 73  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  6818749 actttagagttgaggagttattacccaatggtggggtatttatggagacatttatgcatt 6818808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 372
Target Start/End: Original strand, 44669159 - 44669252
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    |||| |||||||||||  ||||| ||| ||||||||||||||| ||||||| |||||||||||| ||||||||||||||| | ||||| |||||    
T  44669159 aatgcccaatggtggggcactgaccatcgagttttaggagttactacccaatggtggggtagtggcgattcatatgcatttgatgattcagaat 44669252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 372
Target Start/End: Complemental strand, 3897086 - 3896998
Alignment:
Q  284 ccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    |||||||||||| | |||  || ||||||||  ||||| |||||||||||||||||||| | |||||||||||||| |||||| |||||    
T  3897086 ccaatggtgggacattgacaatcgagttttaaaagttactacccaacggtggggtagtggcaattcatatgcattacgtgattcagaat 3896998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 5536944 - 5536897
Alignment:
Q  26 aggagttattatccaatggtggggtatttatggagacattcatgcatt 73  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||    
T  5536944 aggagttattatccaatggtgaggtatttacggagacattcatgcatt 5536897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 44669252 - 44669314
Alignment:
Q  278 taatgtccaatggtgggatactgaacattgagtttt-aggagttattacccaacggtggggta 339  Q
    ||||||||||||||||| |||||||||| || |||| |||||||||||||||| |||||||||    
T  44669252 taatgtccaatggtggggtactgaacatcgaatttttaggagttattacccaatggtggggta 44669314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 279 - 372
Target Start/End: Original strand, 3510110 - 3510203
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    |||| ||||||||||| |||||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  3510110 aatgcccaatggtggggtactgaccatcgagttttaggagttactacccaacggtggggtagtggcgattcatatgcattaggtgattcagaat 3510203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 286 - 366
Target Start/End: Original strand, 21441880 - 21441960
Alignment:
Q  286 aatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatt 366  Q
    ||||||||| || ||||||| |||||||||||||||||| ||||  |||||||| ||||||||||||||||||||||||||    
T  21441880 aatggtggggtattgaacatcgagttttaggagttattatccaatagtggggtattgacgattcatatgcattaggtgatt 21441960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 372
Target Start/End: Original strand, 24540920 - 24541013
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    |||| |||||||||||  ||||| ||| || ||||| || ||| |||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  24540920 aatgcccaatggtggggcactgaccatcgatttttatgatttactacccaacggtggggtagtggcgattcatatgcattaggtgattcagaat 24541013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 307 - 366
Target Start/End: Original strand, 15278147 - 15278206
Alignment:
Q  307 gagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatt 366  Q
    |||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15278147 gagttttgtgagttattacccaacggtggggtagtggcgattcatatgcattaggtgatt 15278206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 34518400 - 34518338
Alignment:
Q  278 taatgtccaatggtgggatactgaacattgagtttt-aggagttattacccaacggtggggta 339  Q
    ||||||||||||||||| |||||||||| || |||| |||||||||||||||| |||||||||    
T  34518400 taatgtccaatggtggggtactgaacatcgaatttttaggagttattacccaatggtggggta 34518338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 358
Target Start/End: Complemental strand, 34518471 - 34518414
Alignment:
Q  301 aacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcatt 358  Q
    ||||||||||||||||||||| | ||||| ||| ||||||||||||||||||| ||||    
T  34518471 aacattgagttttaggagttactgcccaatggtagggtagtgacgattcatatacatt 34518414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 34514516 - 34514465
Alignment:
Q  307 gagttttaggagttattacccaacggtggggtagtgacgattcatatgcatt 358  Q
    ||||||||||||||| ||||||| ||| |||||||||| |||||||||||||    
T  34514516 gagttttaggagttactacccaatggtagggtagtgaccattcatatgcatt 34514465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 3510203 - 3510265
Alignment:
Q  278 taatgtccaatggtgggatactgaacattgagtttt-aggagttattacccaacggtggggta 339  Q
    ||||| ||||||||||| ||||||||||  | |||| |||||||||||||||| |||||||||    
T  3510203 taatgcccaatggtggggtactgaacatcaaatttttaggagttattacccaatggtggggta 3510265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 24541013 - 24541075
Alignment:
Q  278 taatgtccaatggtgggatactgaacattgagtttt-aggagttattacccaacggtggggta 339  Q
    ||||| ||||||||||| |||||||||  || |||| |||||||||||||||| |||||||||    
T  24541013 taatgcccaatggtggggtactgaacaccgaatttttaggagttattacccaatggtggggta 24541075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 3510055 - 3510095
Alignment:
Q  33 attatccaatggtggggtatttatggagacattcatgcatt 73  Q
    |||| |||| ||||||||||||| |||||||||||||||||    
T  3510055 attacccaacggtggggtatttacggagacattcatgcatt 3510095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 15278063 - 15278103
Alignment:
Q  33 attatccaatggtggggtatttatggagacattcatgcatt 73  Q
    |||| |||| ||||||||||||| |||||||||||||||||    
T  15278063 attacccaacggtggggtatttacggagacattcatgcatt 15278103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 279 - 372
Target Start/End: Original strand, 2039278 - 2039371
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    |||| |||||||||||| |||||  |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  2039278 aatgcccaatggtgggacactgactattgagttttaggagttactacccaacggtggggtagtggcgattcatatgcattaggtgattcagaat 2039371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 372
Target Start/End: Complemental strand, 29962851 - 29962758
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    |||| |||||||| ||  ||||| |||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  29962851 aatgcccaatggtagggcactgaccattgaattttaggagttactacccaacggtggggtagtggcgattcatatgcattaggtgattcagaat 29962758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 2039379 - 2039433
Alignment:
Q  286 aatggtgggatactgaacattgagtttt-aggagttattacccaacggtggggta 339  Q
    ||||||||| |||||||||| || |||| |||||||||||||||| |||||||||    
T  2039379 aatggtggggtactgaacatcgaatttttaggagttattacccaatggtggggta 2039433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 2039223 - 2039263
Alignment:
Q  33 attatccaatggtggggtatttatggagacattcatgcatt 73  Q
    |||| |||| ||||||||||||| |||||||||||||||||    
T  2039223 attacccaacggtggggtatttaaggagacattcatgcatt 2039263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 29962906 - 29962866
Alignment:
Q  33 attatccaatggtggggtatttatggagacattcatgcatt 73  Q
    |||| |||| ||||||||||||| |||||||||||||||||    
T  29962906 attacccaacggtggggtatttaaggagacattcatgcatt 29962866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 279 - 372
Target Start/End: Original strand, 18153672 - 18153765
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    |||| |||| |||||| |||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||| |||||    
T  18153672 aatgcccaacggtggggtactgaacatcgagttttaggagttattacccaatggtggggtaatgacgattcatatgcattagatgattcagaat 18153765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 279 - 372
Target Start/End: Original strand, 18902241 - 18902334
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    |||| ||||||||||| |||| | ||| ||||||||||||||| |||| ||||||||||||||| | ||||||||||||||||||||| |||||    
T  18902241 aatgcccaatggtggggtacttaccatcgagttttaggagttactaccgaacggtggggtagtggcaattcatatgcattaggtgattcagaat 18902334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 18153601 - 18153657
Alignment:
Q  17 ttagagttgaggagttattatccaatggtggggtatttatggagacattcatgcatt 73  Q
    ||||| || ||||||||||| |||||||||||||||||| ||||||| |||||||||    
T  18153601 ttagatttaaggagttattacccaatggtggggtatttacggagacaatcatgcatt 18153657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 18153765 - 18153827
Alignment:
Q  278 taatgtccaatggtgggatactgaacattgagtttt-aggagttattacccaacggtggggta 339  Q
    ||||| ||||||||||| |||||||||| || |||| |||||||||||||||| |||||||||    
T  18153765 taatgcccaatggtggggtactgaacatcgaatttttaggagttattacccaatggtggggta 18153827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 18902334 - 18902396
Alignment:
Q  278 taatgtccaatggtgggatactgaacattgagtttt-aggagttattacccaacggtggggta 339  Q
    ||||| ||||||||||| |||||||||| || |||| |||||||||||||||| |||||||||    
T  18902334 taatgcccaatggtggggtactgaacatcgaatttttaggagttattacccaatggtggggta 18902396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 372
Target Start/End: Original strand, 10637 - 10730
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    ||||||||||||||||  ||||| ||| ||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||| |||||    
T  10637 aatgtccaatggtggggcactgaccatcgagttttaggagttactacccaacggtgggatagtggcgattcatatgaattaggtgattcagaat 10730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 10730 - 10792
Alignment:
Q  278 taatgtccaatggtgggatactgaacattgagtttt-aggagttattacccaacggtggggta 339  Q
    ||||| ||||||||||| |||||||||| || |||| |||||||||||||||| |||||||||    
T  10730 taatgcccaatggtggggtactgaacatcgaatttttaggagttattacccaatggtggggta 10792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 10582 - 10622
Alignment:
Q  33 attatccaatggtggggtatttatggagacattcatgcatt 73  Q
    |||| |||| ||||||||||||| |||||||||||||||||    
T  10582 attacccaacggtggggtatttacggagacattcatgcatt 10622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 372
Target Start/End: Original strand, 15426214 - 15426307
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    |||| |||||||||||  ||||| ||| ||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  15426214 aatgcccaatggtggggcactgaccatcgagttttaggaattactacccaacggtggggtagtggcgattcatatgcattaggtgattcagaat 15426307  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 279 - 366
Target Start/End: Complemental strand, 28654227 - 28654140
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatt 366  Q
    ||||||||| |||| | |||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||    
T  28654227 aatgtccaacggtgaggtactgaacatcgagttttaggagttattacccaatggtagggtagtgacgattcatatacattagatgatt 28654140  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 279 - 372
Target Start/End: Original strand, 15419197 - 15419290
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    |||| |||||||||||  ||||| ||| || ||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  15419197 aatgcccaatggtggggcactgaccatcgatttttaagagttactacccaacggtggggtagtggcgattcatatgcattaggtgattcagaat 15419290  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 279 - 372
Target Start/End: Original strand, 52945117 - 52945211
Alignment:
Q  279 aatgtccaatggtggga-tactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    |||| |||||||||||  ||||||||||  |||||||||||| |||||||||| ||||||| || |||||||||||||||||||||||| |||||    
T  52945117 aatgcccaatggtgggggtactgaacatcaagttttaggagtcattacccaacagtggggtggtaacgattcatatgcattaggtgattcagaat 52945211  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 28654298 - 28654242
Alignment:
Q  17 ttagagttgaggagttattatccaatggtggggtatttatggagacattcatgcatt 73  Q
    ||||| || ||||||||||| |||||||||||||||||| |||||||||||||||||    
T  28654298 ttagatttaaggagttattacccaatggtggggtatttacggagacattcatgcatt 28654242  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 52945054 - 52945102
Alignment:
Q  25 gaggagttattatccaatggtggggtatttatggagacattcatgcatt 73  Q
    ||||||||| || |||||||||||||||||||||||| |||||||||||    
T  52945054 gaggagttagtacccaatggtggggtatttatggagatattcatgcatt 52945102  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 52945211 - 52945273
Alignment:
Q  278 taatgtccaatggtgggatactgaacattg-agttttaggagttattacccaacggtggggta 339  Q
    ||||| ||||||||||||||| |||||||| | |||||| |||||||| ||||||||||||||    
T  52945211 taatggccaatggtgggataccgaacattgaatttttagaagttattatccaacggtggggta 52945273  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 15419290 - 15419352
Alignment:
Q  278 taatgtccaatggtgggatactgaacattgagtttt-aggagttattacccaacggtggggta 339  Q
    ||||| ||||||||||| |||||||||  || |||| |||||||||||||||| |||||||||    
T  15419290 taatgcccaatggtggggtactgaacaccgaatttttaggagttattacccaatggtggggta 15419352  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 15426307 - 15426369
Alignment:
Q  278 taatgtccaatggtgggatactgaacattgagtttt-aggagttattacccaacggtggggta 339  Q
    ||||| ||||||||||| |||||||||  || |||| |||||||||||||||| |||||||||    
T  15426307 taatgcccaatggtggggtactgaacaccgaatttttaggagttattacccaatggtggggta 15426369  T

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Target: scaffold0172 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 372
Target Start/End: Complemental strand, 34422 - 34347
Alignment:
Q  297 actgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    ||||| ||| ||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||    
T  34422 actgaccatcgagttttaggagttactacccaacggtcgggtagtggcgattcatatgcattaggtgattcagaat 34347  T

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Target: scaffold0172; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 34347 - 34285
Alignment:
Q  278 taatgtccaatggtgggatactgaacattg-agttttaggagttattacccaacggtggggta 339  Q
    ||||| |||||||||||||||||||||| | | ||||||||||||||| |||| |||||||||    
T  34347 taatgcccaatggtgggatactgaacatcgaatttttaggagttattatccaatggtggggta 34285  T

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Target: scaffold0172; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 34495 - 34455
Alignment:
Q  33 attatccaatggtggggtatttatggagacattcatgcatt 73  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  34495 attatccaacggtggggtatttaaggagacattcatgcatt 34455  T

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Target: scaffold0655 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 372
Target Start/End: Original strand, 7827 - 7920
Alignment:
Q  279 aatgtccaatggtgggatactgaacattgagttttaggagttattacccaacggtggggtagtgacgattcatatgcattaggtgatttagaat 372  Q
    |||| ||||||||||| |||||||||| ||||||||||||||||||||||| | | |||||||||| |||||| | ||||||||| || |||||    
T  7827 aatgcccaatggtggggtactgaacatcgagttttaggagttattacccaatgctagggtagtgacaattcattttcattaggtgtttcagaat 7920  T

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