View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_42 (Length: 373)
Name: NF1519_low_42
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 208 - 364
Target Start/End: Original strand, 4461265 - 4461423
Alignment:
| Q |
208 |
tttctactgtgatattattgtcaatacaactaaaatagttgtgtttttgttgta--acgttagtgttcactttgatggatcaaagtgattttgttgatga |
305 |
Q |
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| T |
4461265 |
tttctactgtgatattattttcaatgcaactaaaatagctttgtttatttgggccgacatttgtgttcactctgatggttcaaattgattttgttgatga |
4461364 |
T |
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| Q |
306 |
agcactgtctttctcttagaagctgattacaaaccttatattcacgagtttgatattct |
364 |
Q |
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| T |
4461365 |
agcactttatttctcttagaagctggttacaagctttgtattaatgagtttgatcttct |
4461423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 17478464 - 17478585
Alignment:
| Q |
20 |
aggtttgtttaatccaaccttaatttggtctatatagatttgatgtgaaattaaccaatttttatgaaataaattacacaaattagaagttggatctt-t |
118 |
Q |
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| T |
17478464 |
aggtttgtataatcgaagcttaatctgctctatctaattttgatgtgaaattaaccaatttttatgaaatagattacatgaattagaagttttatcttat |
17478563 |
T |
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| Q |
119 |
tgcacagtataccacttaatat |
140 |
Q |
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| T |
17478564 |
tgcacaatacaccacttaatat |
17478585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 32849202 - 32849138
Alignment:
| Q |
20 |
aggtttgtttaatccaaccttaatttggtctatatagatttgatgtgaaattaaccaatttttat |
84 |
Q |
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| T |
32849202 |
aggttagtttaatccaaccttaatctggtctatatagatttgatgtgaaattaaccaaattttat |
32849138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 4427225 - 4427146
Alignment:
| Q |
38 |
cttaatttggtctatatagatttgatgtgaaattaaccaatttttatgaaataaattacacaaattagaagttggatctt |
117 |
Q |
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| T |
4427225 |
cttaatttggtctacataactatgatgtgaaaattaccattttttatgaaataaattacaaaaattataaattgcatctt |
4427146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 8382586 - 8382462
Alignment:
| Q |
19 |
gaggtttgtttaatccaaccttaatttggtctatatagatttgatgtgaaattaaccaatttttatgaaata--aattacacaaattagaagttggatct |
116 |
Q |
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| T |
8382586 |
gaggtttgtttaatcaaagcttaatttgatctacataactttgatgcaaaattaatcaattctaatgaaatattgattacataaattagaagtagcatct |
8382487 |
T |
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| Q |
117 |
t-ttgcacagtataccacttaatat |
140 |
Q |
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| T |
8382486 |
tattgaacagtacaccacttaatat |
8382462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 8366546 - 8366464
Alignment:
| Q |
58 |
tttgatgtgaaattaaccaatttttatgaaataaattacacaaattagaagttggatctt-ttgcacagtataccacttaata |
139 |
Q |
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| T |
8366546 |
tttgatgcgaaattaaccaaattttataaaatagattacataaattagaagtagcatcttattgaacagtacaccactgaata |
8366464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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