View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1519_low_46 (Length: 366)

Name: NF1519_low_46
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1519_low_46
NF1519_low_46
[»] chr8 (27 HSPs)
chr8 (86-349)||(44106042-44106306)
chr8 (86-221)||(27928017-27928153)
chr8 (19-242)||(41530595-41530826)
chr8 (19-192)||(7971000-7971180)
chr8 (92-243)||(8885535-8885687)
chr8 (86-240)||(3094609-3094764)
chr8 (85-241)||(21004317-21004473)
chr8 (92-229)||(28916722-28916860)
chr8 (85-229)||(31519967-31520112)
chr8 (86-236)||(34853262-34853411)
chr8 (86-302)||(37248414-37248641)
chr8 (86-236)||(42280967-42281121)
chr8 (86-243)||(9073429-9073587)
chr8 (23-243)||(36404177-36404388)
chr8 (92-152)||(40994809-40994869)
chr8 (86-302)||(16310455-16310682)
chr8 (92-186)||(35676620-35676715)
chr8 (19-152)||(24627584-24627725)
chr8 (19-152)||(31234737-31234875)
chr8 (111-174)||(11698387-11698451)
chr8 (19-71)||(31234526-31234578)
chr8 (86-184)||(17119956-17120055)
chr8 (19-78)||(24627874-24627933)
chr8 (19-56)||(10833523-10833560)
chr8 (86-152)||(4259712-4259778)
chr8 (201-243)||(40994744-40994786)
chr8 (85-176)||(33472059-33472151)
[»] chr5 (38 HSPs)
chr5 (7-248)||(26319000-26319241)
chr5 (7-248)||(37094907-37095152)
chr5 (94-301)||(38871493-38871708)
chr5 (85-255)||(25746902-25747071)
chr5 (86-308)||(20891427-20891658)
chr5 (86-243)||(15799112-15799270)
chr5 (92-249)||(15957631-15957788)
chr5 (85-312)||(24203759-24203991)
chr5 (86-242)||(28083454-28083611)
chr5 (92-243)||(6156618-6156770)
chr5 (86-302)||(4064796-4065025)
chr5 (86-226)||(40620066-40620207)
chr5 (86-243)||(38692859-38693017)
chr5 (86-226)||(39524680-39524821)
chr5 (35-176)||(34440688-34440837)
chr5 (85-192)||(26190373-26190481)
chr5 (86-218)||(38372221-38372354)
chr5 (19-249)||(38640601-38640839)
chr5 (92-254)||(33487486-33487649)
chr5 (35-248)||(36359604-36359825)
chr5 (86-176)||(14111851-14111942)
chr5 (85-192)||(12465185-12465289)
chr5 (84-243)||(37183856-37184016)
chr5 (133-243)||(31929229-31929339)
chr5 (86-186)||(32842048-32842149)
chr5 (86-184)||(8032217-8032316)
chr5 (86-152)||(29862591-29862657)
chr5 (86-174)||(31221415-31221504)
chr5 (19-78)||(38640988-38641047)
chr5 (86-247)||(27212591-27212753)
chr5 (19-176)||(28445413-28445578)
chr5 (19-193)||(43388073-43388253)
chr5 (19-78)||(8739196-8739255)
chr5 (157-241)||(28108271-28108354)
chr5 (260-302)||(33487424-33487466)
chr5 (19-71)||(16429133-16429185)
chr5 (93-186)||(26095035-26095129)
chr5 (19-47)||(16429367-16429395)
[»] chr1 (36 HSPs)
chr1 (7-176)||(24471311-24471481)
chr1 (7-176)||(30829463-30829632)
chr1 (19-242)||(43319199-43319429)
chr1 (86-243)||(32817687-32817845)
chr1 (86-302)||(34162797-34163023)
chr1 (86-241)||(42545895-42546050)
chr1 (85-241)||(40908009-40908166)
chr1 (85-248)||(18583619-18583783)
chr1 (86-236)||(40650751-40650903)
chr1 (85-242)||(33611485-33611643)
chr1 (86-255)||(17000292-17000461)
chr1 (86-236)||(15069917-15070069)
chr1 (86-246)||(45567952-45568114)
chr1 (86-236)||(7011141-7011293)
chr1 (94-246)||(41584754-41584907)
chr1 (86-193)||(44573172-44573280)
chr1 (86-185)||(28866707-28866806)
chr1 (92-193)||(45046933-45047034)
chr1 (85-192)||(23442714-23442822)
chr1 (92-243)||(49677418-49677560)
chr1 (85-185)||(49786252-49786352)
chr1 (92-176)||(32542388-32542473)
chr1 (86-181)||(34006246-34006342)
chr1 (77-248)||(38950201-38950361)
chr1 (19-176)||(800806-800969)
chr1 (19-78)||(43318988-43319047)
chr1 (120-247)||(27794776-27794903)
chr1 (130-219)||(52744937-52745027)
chr1 (171-243)||(38885164-38885236)
chr1 (85-186)||(26723564-26723660)
chr1 (19-71)||(9446103-9446155)
chr1 (94-243)||(6223821-6223972)
chr1 (22-70)||(9445897-9445945)
chr1 (22-71)||(800603-800652)
chr1 (201-249)||(30829647-30829695)
chr1 (86-146)||(38885251-38885310)
[»] chr2 (24 HSPs)
chr2 (7-176)||(33366920-33367090)
chr2 (86-255)||(15995184-15995355)
chr2 (92-307)||(25217868-25218096)
chr2 (86-243)||(45153862-45154020)
chr2 (86-221)||(17474870-17475006)
chr2 (86-229)||(39447101-39447245)
chr2 (86-243)||(33452514-33452672)
chr2 (86-243)||(32187940-32188099)
chr2 (88-241)||(36949018-36949172)
chr2 (92-236)||(41510505-41510651)
chr2 (86-242)||(44465798-44465956)
chr2 (86-192)||(4268309-4268416)
chr2 (86-176)||(36874977-36875068)
chr2 (25-249)||(25715282-25715510)
chr2 (20-249)||(9847424-9847660)
chr2 (86-176)||(41854970-41855061)
chr2 (86-176)||(42894369-42894460)
chr2 (86-186)||(41203258-41203358)
chr2 (19-78)||(9847215-9847274)
chr2 (86-249)||(34517020-34517183)
chr2 (92-193)||(5507391-5507495)
chr2 (96-174)||(38308875-38308954)
chr2 (19-73)||(34519540-34519594)
chr2 (201-243)||(41855076-41855118)
[»] chr7 (27 HSPs)
chr7 (86-295)||(28230544-28230760)
chr7 (86-232)||(43737060-43737207)
chr7 (86-243)||(3936033-3936191)
chr7 (85-249)||(36629123-36629289)
chr7 (85-248)||(47202414-47202578)
chr7 (85-187)||(8154880-8154983)
chr7 (86-240)||(24042264-24042419)
chr7 (86-241)||(19225674-19225831)
chr7 (86-307)||(36468613-36468841)
chr7 (86-243)||(42925717-42925875)
chr7 (86-226)||(37518371-37518512)
chr7 (90-249)||(36408291-36408450)
chr7 (87-243)||(3304835-3304993)
chr7 (85-248)||(31642961-31643125)
chr7 (114-243)||(42877149-42877279)
chr7 (101-185)||(33574125-33574210)
chr7 (86-249)||(6467615-6467780)
chr7 (86-174)||(31985594-31985685)
chr7 (86-152)||(7115347-7115413)
chr7 (133-193)||(9151789-9151850)
chr7 (85-227)||(33151148-33151292)
chr7 (19-73)||(5731193-5731247)
chr7 (130-183)||(28349174-28349227)
chr7 (22-71)||(5730987-5731036)
chr7 (99-152)||(26555130-26555183)
chr7 (148-193)||(28346122-28346167)
chr7 (19-71)||(8214298-8214350)
[»] chr6 (19 HSPs)
chr6 (94-306)||(4508386-4508605)
chr6 (86-255)||(3717359-3717529)
chr6 (86-243)||(7412753-7412910)
chr6 (86-227)||(17264351-17264493)
chr6 (85-248)||(32035033-32035197)
chr6 (94-248)||(33413431-33413585)
chr6 (86-243)||(14587636-14587794)
chr6 (86-249)||(5699477-5699641)
chr6 (86-249)||(1945606-1945770)
chr6 (86-302)||(23406655-23406879)
chr6 (86-243)||(2813300-2813460)
chr6 (90-186)||(9905100-9905197)
chr6 (86-152)||(5638879-5638945)
chr6 (86-185)||(24604438-24604538)
chr6 (19-71)||(17501175-17501227)
chr6 (19-69)||(17500967-17501017)
chr6 (86-152)||(21517557-21517623)
chr6 (84-182)||(29289701-29289799)
chr6 (86-124)||(2539496-2539534)
[»] chr3 (40 HSPs)
chr3 (85-243)||(35142002-35142158)
chr3 (35-241)||(48303918-48304131)
chr3 (19-311)||(45244238-45244541)
chr3 (85-249)||(47301938-47302103)
chr3 (86-242)||(47740008-47740165)
chr3 (86-241)||(51540690-51540848)
chr3 (86-243)||(38977824-38977982)
chr3 (86-227)||(39149751-39149892)
chr3 (86-228)||(46622860-46623004)
chr3 (123-241)||(34821509-34821628)
chr3 (86-242)||(51258329-51258485)
chr3 (86-243)||(3902882-3903040)
chr3 (86-255)||(50716165-50716335)
chr3 (86-255)||(50796512-50796682)
chr3 (85-243)||(2358697-2358857)
chr3 (86-180)||(34821419-34821514)
chr3 (21-152)||(32025000-32025137)
chr3 (92-247)||(3352148-3352305)
chr3 (84-176)||(52777223-52777315)
chr3 (86-182)||(501216-501314)
chr3 (99-248)||(3937308-3937458)
chr3 (86-191)||(33438499-33438604)
chr3 (85-182)||(28872989-28873087)
chr3 (140-241)||(47123033-47123135)
chr3 (140-241)||(47130399-47130501)
chr3 (19-78)||(8735278-8735337)
chr3 (19-78)||(9087519-9087578)
chr3 (85-152)||(43473044-43473111)
chr3 (94-187)||(49096311-49096405)
chr3 (201-249)||(8735090-8735138)
chr3 (201-249)||(9087331-9087379)
chr3 (86-174)||(30721881-30721974)
chr3 (19-78)||(45244691-45244750)
chr3 (201-249)||(42936588-42936636)
chr3 (19-70)||(8735493-8735544)
chr3 (19-70)||(9087734-9087785)
chr3 (148-183)||(42936685-42936720)
chr3 (201-242)||(28830284-28830325)
chr3 (201-242)||(33700683-33700724)
chr3 (147-183)||(42937052-42937088)
[»] chr4 (35 HSPs)
chr4 (86-243)||(19835453-19835611)
chr4 (84-243)||(54631537-54631697)
chr4 (85-243)||(17933212-17933371)
chr4 (86-236)||(25491471-25491622)
chr4 (84-226)||(48319139-48319281)
chr4 (85-247)||(23523835-23523998)
chr4 (92-221)||(7931613-7931743)
chr4 (86-193)||(40703647-40703755)
chr4 (86-255)||(55052695-55052865)
chr4 (86-249)||(25539024-25539188)
chr4 (86-193)||(25752520-25752628)
chr4 (101-248)||(32441739-32441887)
chr4 (86-243)||(38536103-38536261)
chr4 (86-246)||(46440350-46440512)
chr4 (118-242)||(6228919-6229044)
chr4 (86-181)||(8106387-8106483)
chr4 (85-176)||(34972864-34972956)
chr4 (86-249)||(3703326-3703490)
chr4 (85-248)||(49396936-49397100)
chr4 (86-255)||(2506107-2506280)
chr4 (92-192)||(29822603-29822704)
chr4 (127-236)||(53894108-53894218)
chr4 (87-242)||(6003748-6003906)
chr4 (93-186)||(38416555-38416649)
chr4 (93-162)||(41413183-41413252)
chr4 (19-71)||(25140723-25140775)
chr4 (130-193)||(50392529-50392593)
chr4 (86-148)||(31582498-31582560)
chr4 (19-133)||(7817367-7817486)
chr4 (19-71)||(25140514-25140566)
chr4 (19-114)||(7794211-7794312)
chr4 (21-71)||(42660385-42660435)
chr4 (35-78)||(50392453-50392496)
chr4 (260-302)||(25539210-25539252)
chr4 (201-249)||(42660450-42660498)
[»] scaffold0027 (1 HSPs)
scaffold0027 (86-241)||(142039-142194)
[»] scaffold0508 (1 HSPs)
scaffold0508 (86-306)||(3471-3701)
[»] scaffold0137 (1 HSPs)
scaffold0137 (86-243)||(9573-9731)
[»] scaffold0182 (1 HSPs)
scaffold0182 (86-193)||(23097-23205)
[»] scaffold0016 (1 HSPs)
scaffold0016 (19-78)||(205814-205873)
[»] scaffold0010 (1 HSPs)
scaffold0010 (164-246)||(140530-140612)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 86 - 349
Target Start/End: Complemental strand, 44106306 - 44106042
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctattttt-gaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  44106306 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatctggaaaaatc 44106207  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaactaaagggtattaaaatagggcgcgcgagaaaaccca 284  Q
    |||||||||       |||||||||||||||||||||||||||   ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44106206 cgttactcattttttcaccctttaacaaaagaaaacaccattctagattataaaatccggaaactaaagggtattaaaatagggcgcgcgagaaaaccca 44106107  T
Q  285 catggtgggaaaagtaattcccataaaaatatgagaggatgtactatttggtaaaagaagtaatg 349  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44106106 catggtgggaaaaggaattcccataaaaatatgagaggatgtactatttggtaaaagaagtaatg 44106042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 86 - 221
Target Start/End: Original strand, 27928017 - 27928153
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27928017 aaaaatggtgtttagggggtttcctgattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaatc 27928116  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaaca 221  Q
    |||||||||       |||||||||||||||||||||    
T  27928117 cgttactcattttttcaccctttaacaaaagaaaaca 27928153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 41530826 - 41530595
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggattgca------ccatggaaaaaatggtgtttagggggttttcaga 112  Q
    ||||||||||||||||| |||||||| ||||| |||||| ||||||||||||||||||||      ||||| |||||| ||| |||||||||| ||||||    
T  41530826 tgttacaaacatgttcaaaattggtgatggtgatgtccggattacgtaatccggattgcaacagcaccatgaaaaaaagggtttttagggggtgttcaga 41530727  T
Q  113 ttatgtaatccg-gaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatccgttactcannnnnnnaccctttaac 210  Q
    |||||||||| |  ||| |||||||||||||||||| |||||||  ||||||||||||||||| ||||||||||||| |||||       ||||||||||    
T  41530726 ttatgtaatctgaaaaaaatcatgtaacgcgccctattttttgagatttccggattacaaaattcggaaaaatccgtaactcatttttccaccctttaac 41530627  T
Q  211 aaaagaaaacaccattccgaattataaaatcc 242  Q
    ||| ||||||| ||||||| ||||||||||||    
T  41530626 aaaggaaaacatcattccggattataaaatcc 41530595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 7971000 - 7971180
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggattgca------ccatggaaaaaatggtgtttagggggttttcaga 112  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||      |||||||||||| |||||||| ||||| ||  ||    
T  7971000 tgttacaaacatgttcagaattgatgctggtgctgtccggattacgtaatccggattgcatcagcaccatggaaaaaagggtgtttatggggtgtttgga 7971099  T
Q  113 ttatgtaatccggaaa-catcatgtaacgcgccctatttttgaagtttccggattacaaaatccggaaaaatccgttactc 192  Q
    ||||||||||| |||| ||||| ||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  7971100 ttatgtaatccagaaaacatcacgtagcgcgtcctatttttgaagtttccagattacaaaatccggaaaaatccgtaactc 7971180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 92 - 243
Target Start/End: Original strand, 8885535 - 8885687
Alignment:
Q  92 ggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatccgttac 190  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  8885535 ggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgttac 8885634  T
Q  191 tcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    |||       || |||||||||||||||||| ||||||| |||||| ||||||    
T  8885635 tcattttttcactctttaacaaaagaaaacatcattccggattatataatccg 8885687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 86 - 240
Target Start/End: Complemental strand, 3094764 - 3094609
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |    
T  3094764 aaaaatggtgtttagggggtttccggattatgtaatccggaaacatcatgtaatgcgccctattttttgaagtttccggattacaaaatccggaaaaacc 3094665  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaat 240  Q
    ||| ||||        ||||| ||||||| ||||||||||||||||||||| ||||    
T  3094664 cgtaactccatttttcaccctataacaaaggaaaacaccattccgaattattaaat 3094609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 85 - 241
Target Start/End: Complemental strand, 21004473 - 21004317
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaat 183  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||| || ||||| ||||||||||||||||||||||||||||||    
T  21004473 aaaaaatggtgtttagggagttttcggattatgtaatccggaaacat-atgtaacgcgccttattttttaaagtttccggattacaaaatccggaaaaat 21004375  T
Q  184 ccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatc 241  Q
    |||| ||||        ||||| ||||||| ||||||||||||||| ||||| |||||    
T  21004374 ccgtaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatc 21004317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 92 - 229
Target Start/End: Complemental strand, 28916860 - 28916722
Alignment:
Q  92 ggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatccgttac 190  Q
    |||||||||||||||| | | ||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  28916860 ggtgtttagggggtttccggtttatgtaatccagaaacatcatttaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgttac 28916761  T
Q  191 tcannnnnnnaccctttaacaaaagaaaacaccattccg 229  Q
     ||       ||||||||||||||||||||| |||||||    
T  28916760 ccattttttcaccctttaacaaaagaaaacatcattccg 28916722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 85 - 229
Target Start/End: Original strand, 31519967 - 31520112
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaat 183  Q
    |||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||     
T  31519967 aaaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgctctattttttgaagtttctggattacaaaatccggaaaaag 31520066  T
Q  184 ccgttactcannnnnnnaccctttaacaaaagaaaacaccattccg 229  Q
    |||| ||||        ||||| ||||||| |||||||||||||||    
T  31520067 ccgtaactccatttttcaccctataacaaaggaaaacaccattccg 31520112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 86 - 236
Target Start/End: Complemental strand, 34853411 - 34853262
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatttttgaa-gtttccggattacaaaatccggaaaaatc 184  Q
    ||||| ||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||| |    
T  34853411 aaaaagggtgtttagagggtttccagatt-tgtaatccggaaacatcatgtaacgcgccctattttttaaagttttcggattacaaaatccggaaaaacc 34853313  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattata 236  Q
    ||| |||||       |||||||||||||| |||||| ||||||||||||||    
T  34853312 cgt-actcattttcttaccctttaacaaaataaaacatcattccgaattata 34853262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 86 - 302
Target Start/End: Complemental strand, 37248641 - 37248414
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||| ||||||||||||| |||| |||||| ||||||||||||||| |||||| |    
T  37248641 aaaaatggtgtttagggggtttctggattatgtaatccggaaacatcatctaacgcgccctatttttttaagttttcggattacaaaatccagaaaaacc 37248542  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaactaaagggtatt----------aaaatagggcgcgcg 274  Q
    ||| ||||        ||||| ||||||| ||||||||||||| | ||| | ||||||| ||||| ||||| |||          |||||||||||||||    
T  37248541 cgtaactccatttttcaccctataacaaaggaaaacaccattctggattttgaaatccggaaactcaagggcatttttgaagaaaaaaatagggcgcgcg 37248442  T
Q  275 agaaaacccacatggtgggaaaagtaat 302  Q
    || ||||||  | |||||||||||||||    
T  37248441 aggaaacccctagggtgggaaaagtaat 37248414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 86 - 236
Target Start/End: Original strand, 42280967 - 42281121
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatg---taacgcgccctatttt-tgaagtttccggattacaaaatccggaaaa 181  Q
    ||||| |||||||||||||||| | |||||||||||| ||||||||||||   |||||||| ||||||| |||||||| |||||||| ||||||||||||    
T  42280967 aaaaagggtgtttagggggtttccggattatgtaatctggaaacatcatgatgtaacgcgctctattttttgaagttttcggattacgaaatccggaaaa 42281066  T
Q  182 atccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattata 236  Q
    ||||||||||||       |||||||||||||| |||||| ||||||| ||||||    
T  42281067 atccgttactcattttttcaccctttaacaaaaaaaaacatcattccggattata 42281121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 86 - 243
Target Start/End: Complemental strand, 9073587 - 9073429
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| ||||||||||||||||   ||||||||||||||||||||||||||||||   | || ||||||||||||||||||||  ||||||| |||| ||    
T  9073587 aaaaaaggtgtttagggggtttctggattatgtaatccggaaacatcatgtaacgaatcttattttttgaagtttccggattaacaaatccgaaaaagtc 9073488  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    |||||||||       ||||||||||||||||||||| |||| ||||||||| ||||||    
T  9073487 cgttactcattttttaaccctttaacaaaagaaaacatcatttcgaattatataatccg 9073429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 243
Target Start/End: Original strand, 36404177 - 36404388
Alignment:
Q  23 acaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggattgcaccatggaaaaaatggtgtttagggggttttcagattatgtaatc 122  Q
    ||||||||||||||||||||||||||||||||||| ||| | | |        |||||||| |||||| |||||||||| | ||||| |||||| |||||    
T  36404177 acaaacatgttcagaattggtgctggtgctgtccggattgcatca--------gcaccatgaaaaaaagggtgtttaggag-ttttcggattatataatc 36404267  T
Q  123 cggaaacatcatgtaacgcgccctatttttgaag-tttccggattacaaaatccggaaaaatccgttactcannnnnnnaccctttaacaaaagaaaaca 221  Q
    || ||| |||||||||| ||||||||||||  || ||| ||||||||||||||||||| ||||||| |||||       ||||||||||||| | ||||     
T  36404268 cgaaaa-atcatgtaacacgccctattttttgagattttcggattacaaaatccggaataatccgtaactcattttttcaccctttaacaaagggaaact 36404366  T
Q  222 ccattccgaattataaaatccg 243  Q
    |||||||| |||||||||||||    
T  36404367 ccattccggattataaaatccg 36404388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 40994869 - 40994809
Alignment:
Q  92 ggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctattttt 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40994869 ggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctattttt 40994809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 86 - 302
Target Start/End: Complemental strand, 16310682 - 16310455
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctattttt-gaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| ||||||||||| ||||   |||| ||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||||||||||||| |    
T  16310682 aaaaagggtgtttagggagtttctggattgtgtaatccggaaaaatcatctaacgcaccctattttttgaagtttccggattacaaaatccggaaaaacc 16310583  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaactaaagggtatt----------aaaatagggcgcgcg 274  Q
     || ||||        ||||  ||||||| ||||||||||||| | ||||| |||||   ||||| ||||| |||          |||||||||||||||    
T  16310582 tgtaactccatttttcaccccataacaaaggaaaacaccattctggattatgaaatcgagaaactcaagggaatttttgaaaaaaaaaatagggcgcgcg 16310483  T
Q  275 agaaaacccacatggtgggaaaagtaat 302  Q
    || ||||||||| |||||||||||||||    
T  16310482 aggaaacccacagggtgggaaaagtaat 16310455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 35676620 - 35676715
Alignment:
Q  92 ggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatccg 186  Q
    |||| ||||||||| ||| |||||||||||||||||| ||||| || ||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  35676620 ggtggttagggggtgttcggattatgtaatccggaaaaatcatatagcgcgccctattttttgtagtttccggattacaaaatccggaaaaatccg 35676715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 24627725 - 24627584
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggatt------gcaccatg--gaaaaaatggtgtttagggggttttca 110  Q
    |||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||      ||||||||   ||||||||||||||||||||| |||     
T  24627725 tgttacaaacatattcagaattggtgctggtgttgtccggattacgtaatccggattgcatcagcaccatgaaaaaaaaatggtgtttagggggtattcg 24627626  T
Q  111 gattatgtaatccggaaacatcatgtaacgcgccctattttt 152  Q
    |||| | ||||||| ||| ||||  || |||| |||||||||    
T  24627625 gattctataatccgaaaaaatcaaatagcgcgtcctattttt 24627584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 31234737 - 31234875
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggattgc------accatggaaaaaatggtgtttagggggttttcaga 112  Q
    |||||| ||||||||||||||||||||| |||||||||| ||||||||||||| | |||      ||||| |||||||||||||||||||| | ||| ||    
T  31234737 tgttacgaacatgttcagaattggtgctagtgctgtccggattacgtaatccgaactgcatcagtaccat-gaaaaaatggtgtttaggggttgttcgga 31234835  T
Q  113 ttatgtaatccggaaacatcatgtaacgcgccctattttt 152  Q
    || | ||||||| ||| || || || ||||||||||||||    
T  31234836 ttctataatccgaaaaaattatatagcgcgccctattttt 31234875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 11698387 - 11698451
Alignment:
Q  111 gattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatc 174  Q
    ||||||||||||||||||||||||||||| || | || |||||||||||||||||||||||||||    
T  11698387 gattatgtaatccggaaacatcatgtaacacgtcttattttttgaagtttccggattacaaaatc 11698451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 31234526 - 31234578
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccg 71  Q
    ||||||||| |||||||||||||||||||||| ||| || |||||||||||||    
T  31234526 tgttacaaatatgttcagaattggtgctggtgttgttcggattacgtaatccg 31234578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 184
Target Start/End: Original strand, 17119956 - 17120055
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    |||||||||||||| ||||| |||||||||| ||| ||| ||| ||||  || ||||||| | |||||||||||| ||||||| | |||||| |||||||    
T  17119956 aaaaatggtgtttaaggggtgttcagattatataaaccgaaaaaatcaaatagcgcgcccaattttttgaagttttcggattatataatccgaaaaaatc 17120055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 24627933 - 24627874
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggattgca 78  Q
    |||||||||||||||||||||||||| || || | |||||||||| ||||||||| ||||    
T  24627933 tgttacaaacatgttcagaattggtgttgatgttatccgaattacttaatccggactgca 24627874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 10833523 - 10833560
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtcc 56  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  10833523 tgttacaaacatgttcagaattggtgctggtgcagtcc 10833560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 4259712 - 4259778
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctattttt 152  Q
    ||||||||||||||||||||  ||| ||||| ||||||| ||| |||| | ||| ||||||||||||    
T  4259712 aaaaatggtgtttagggggtgctcaaattatataatccgaaaaaatcaaggaacacgccctattttt 4259778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 40994786 - 40994744
Alignment:
Q  201 accctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    ||||||||||||||||||||| ||||||| |||||| ||||||    
T  40994786 accctttaacaaaagaaaacatcattccggattatataatccg 40994744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 33472151 - 33472059
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccg 176  Q
    |||||||||||||||||||||  | ||||| | ||||||| ||| ||||  || |||||||||| |||||| |||| ||||||| | ||||||    
T  33472151 aaaaaatggtgtttagggggtggttagattctataatccgaaaaaatcaaatagcgcgccctattttttgaggttttcggattatagaatccg 33472059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 9e-86; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 26319241 - 26319000
Alignment:
Q  7 gtgagatgaaactgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggattgcaccatggaaaaaatggtgtttagggggtt 106  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||    
T  26319241 gtgatatgaaactgttacaaacatgttcagatttggtgctggtgctgtacggattacgtaatccggattgcaccatggaaaaaagggtgtttagggggtt 26319142  T
Q  107 ttcagattatgtaatccggaaacatcatgtaacgcgccctatttttgaagtttccggattacaaaatccggaaaaatccgttactcannnnnnnaccctt 206  Q
    ||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||| ||||        |||||     
T  26319141 ttcggattatgtaatccggaaacatcatgtaacgcaccctattttggaagtttccggataacaaaatccggaaaaatccgtaactccatttttcacccta 26319042  T
Q  207 taacaaaagaaaacaccattccgaattataaaatccgaaaac 248  Q
    ||||||| ||||||||||||||||||||| ||||||| ||||    
T  26319041 taacaaaggaaaacaccattccgaattatgaaatccggaaac 26319000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 37094907 - 37095152
Alignment:
Q  7 gtgagatgaaactgttacaaacatgttcagaattggtgctggtgc------tgtccgaattacgtaatccggattgcaccatggaaaaaatggtgtttag 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||      ||| || |||||||||||||||||||||||||||||||| ||||||||     
T  37094907 gtgatatgaaactgttacaaacatgttcagaattggtgctggtgcagttgctgttcggattacgtaatccggattgcaccatggaaaaaagggtgtttaa 37095006  T
Q  101 ggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatttttgaagtttccggattacaaaatccggaaaaatccgttactcannnnnnn 200  Q
    ||| ||||| ||||  |||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||| ||||            
T  37095007 ggg-ttttcggatttggtaatccggaaacatcatgtaacgcgccttattttttaagttttcggattacaaaatccggaaaaatccgtaactccatttttc 37095105  T
Q  201 accctttaacaaaagaaaacaccattccgaattataaaatccgaaaac 248  Q
    ||||| |||| |||| ||||||||||||| ||||| |||| |||||||    
T  37095106 accctataac-aaaggaaacaccattccggattatgaaattcgaaaac 37095152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 94 - 301
Target Start/End: Complemental strand, 38871708 - 38871493
Alignment:
Q  94 tgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatttt-tgaagtttccggattacaaaatccggaaaaatccgttactc 192  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  38871708 tgtttagagggttttcggattatgtaatccggaaacatcatgtaacgccccctattttatgaagttttcggattacaaaatccggaaaaatccgttactc 38871609  T
Q  193 annnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaactaaagggtatt-------aaaatagggcgcgcgagaaaacccac 285  Q
    |       ||  ||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||       ||||||||| ||||||| ||||||||    
T  38871608 attttttaactttttaacaaaagaaaacaccattccggattataaaatccgaaaactcaaggatatttttgaaaaaaatagggtgcgcgaggaaacccac 38871509  T
Q  286 atggtgggaaaagtaa 301  Q
    | ||||| ||||||||    
T  38871508 agggtggaaaaagtaa 38871493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 85 - 255
Target Start/End: Complemental strand, 25747071 - 25746902
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||||||||||||||||| ||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25747071 aaaaaatggtgtttaggggatttccggattatgtaatccgaaaacatcatgtaacgcgccctatttttgaagtttccggattagaaaatccggaaaaatc 25746972  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaactaaaggg 255  Q
    |||||||||       | | ||||||||||||||||| ||||||||||||||||||||| ||||| |||||    
T  25746971 cgttactcattttttca-cttttaacaaaagaaaacatcattccgaattataaaatccggaaactcaaggg 25746902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 86 - 308
Target Start/End: Complemental strand, 20891658 - 20891427
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||||| ||||||||||| |||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||    
T  20891658 aaaaagggtgtttagggggttttcggattatgtaattcggaaacatcatgtaacatgccctattttttgaagtttccggattacaaaatccggaaaaatc 20891559  T
Q  185 cgttactca-nnnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaactaaagggtatt-------aaaatagggcgcgcgag 276  Q
    |||||||||        ||| ||||| |||||||||||||||| || ||||||||||||| | ||| ||||| |||       |||||| ||||||||||    
T  20891558 cgttactcatttttttcaccatttaataaaagaaaacaccatttcggattataaaatccggatactcaagggcatttttggaaaaaataaggcgcgcgag 20891459  T
Q  277 aaaacccacatggtgggaaaagtaattcccat 308  Q
     ||||||||| |||||||||||||||||||||    
T  20891458 gaaacccacagggtgggaaaagtaattcccat 20891427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 86 - 243
Target Start/End: Complemental strand, 15799270 - 15799112
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  15799270 aaaaagggtgtttagggggttttcggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacc 15799171  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    ||| ||||        ||||| ||||||| ||||| ||||||||| ||||| |||||||    
T  15799170 cgtaactccatttttcaccctataacaaaggaaaataccattccggattatgaaatccg 15799112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 92 - 249
Target Start/End: Complemental strand, 15957788 - 15957631
Alignment:
Q  92 ggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctattttt-gaagtttccggattacaaaatccggaaaaatccgttac 190  Q
    |||||||||||||||| | |||||| |||||||||||||||||||||  |||||||||||| |||||||||| |||||||||||||||||||||| ||||    
T  15957788 ggtgtttagggggtttccggattatttaatccggaaacatcatgtaatacgccctatttttcgaagtttccgaattacaaaatccggaaaaatccattac 15957689  T
Q  191 tcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaact 249  Q
    |||       |||||||||||||||||||||||||| || |||||||||||||||||||    
T  15957688 tca-tttttcaccctttaacaaaagaaaacaccatttcggattataaaatccgaaaact 15957631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 85 - 312
Target Start/End: Original strand, 24203759 - 24203991
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaat 183  Q
    |||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||     |||||||||||||| ||||||    
T  24203759 aaaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagt----cgattacaaaatccgaaaaaat 24203854  T
Q  184 ccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaactaaagggtatt--------aaaatagggcgcgcga 275  Q
    | |||| |||       ||||||||||||||||||||||||||||| ||||||||||||| ||||| || || |||        |||||||||| |||||    
T  24203855 ctgttaatcatttttccaccctttaacaaaagaaaacaccattccggattataaaatccggaaactcaatggcatttttggaaaaaaatagggcacgcga 24203954  T
Q  276 gaaaacccacatggtgggaaaagtaattcccataaaa 312  Q
    | ||||||||| | ||| |||||||| |||| |||||    
T  24203955 ggaaacccacaggatggaaaaagtaaatcccttaaaa 24203991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 86 - 242
Target Start/End: Original strand, 28083454 - 28083611
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| ||||||||| |||||| | |||||||||||||||||| ||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |    
T  28083454 aaaaagggtgtttagagggtttccggattatgtaatccggaaatatcatgtaatgcgccctattttttgaattttccggattacaaaatccggaaaaacc 28083553  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatcc 242  Q
    |||||||||       ||||||||||||||||||||| ||||||| |||||| |||||    
T  28083554 cgttactcattttctcaccctttaacaaaagaaaacatcattccggattatataatcc 28083611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 92 - 243
Target Start/End: Complemental strand, 6156770 - 6156618
Alignment:
Q  92 ggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatccgttac 190  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||    
T  6156770 ggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgtaac 6156671  T
Q  191 tcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    ||        ||| | ||||||| ||||||||||||||| ||||| |||||||    
T  6156670 tccatttttcaccatataacaaaggaaaacaccattccggattatgaaatccg 6156618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 86 - 302
Target Start/End: Original strand, 4064796 - 4065025
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||| | |||||||||||||||||||||||| |||| ||||||| ||||| |||||||||||||||| |||||||||||| |    
T  4064796 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatctaacacgccctattttttaaagtttccggattacataatccggaaaaacc 4064895  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaactaaagggtatt------------aaaatagggcgcg 272  Q
    ||| ||||        ||||| ||||||| ||||||||||||||| ||||| ||||||| ||||| ||||| |||            |||||||||||||    
T  4064896 cgtaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatccggaaactcaagggcatttttggaagaaaaaaaatagggcgcg 4064995  T
Q  273 cgagaaaacccacatggtgggaaaagtaat 302  Q
    |||| ||||||||  |||||||||||||||    
T  4064996 cgaggaaacccactgggtgggaaaagtaat 4065025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 40620066 - 40620207
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||||| |||||||||||||| | |||||||||||||| ||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  40620066 aaaaatgatgtttagggggtttccggattatgtaatccgaaaacatcatataacgtgccctattttttgaagtttccggattacaaaatccggaaaaatc 40620165  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccatt 226  Q
     ||||||||       |||||| |||||||||||||| ||||    
T  40620166 tgttactcattttttcacccttcaacaaaagaaaacatcatt 40620207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 38692859 - 38693017
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccgg-aaaaat 183  Q
    ||||| |||||||||||| ||| | ||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||| ||| |||||     
T  38692859 aaaaagggtgtttagggg-tttccggattatgtaatccggaaacatcacgtaacgcgccctatttttttaagtttccggattacaaaattcggaaaaaac 38692957  T
Q  184 ccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    ||||||||||       ||||||||||||||||||||| ||||||| |||||| ||||||    
T  38692958 ccgttactcattttttcaccctttaacaaaagaaaacatcattccggattatataatccg 38693017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 86 - 226
Target Start/End: Complemental strand, 39524821 - 39524680
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||| |  ||||||||||||| |||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||    
T  39524821 aaaaagggtgtttagggggtttccgaattatgtaatccgaaaacatcatgtaacacgccctatttttttaagtttccggattacaaaatccggaaaaatc 39524722  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccatt 226  Q
    | || ||||       ||||||||||||||||||||| ||||    
T  39524721 cattgctcattttttcaccctttaacaaaagaaaacatcatt 39524680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 35 - 176
Target Start/End: Complemental strand, 34440837 - 34440688
Alignment:
Q  35 agaattggtgctggtgctgtccgaattacgtaatccggattgca------ccatggaaaaaat--ggtgtttagggggttttcagattatgtaatccgga 126  Q
    ||||||||||||||  ||||| |||||||||||||| |||||||      ||||| ||||||   |||||||||||||||||| ||||||| |||||| |    
T  34440837 agaattggtgctggcactgtctgaattacgtaatccagattgcatcagcaccatgaaaaaaaaagggtgtttagggggttttcggattatgcaatccgaa 34440738  T
Q  127 aacatcatgtaacgcgccctatttttgaagtttccggattacaaaatccg 176  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  34440737 aacatcatgtaacgcgtcctatttttgaagttttcggattacaaaatccg 34440688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 85 - 192
Target Start/End: Original strand, 26190373 - 26190481
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatttt-tgaagtttccggattacaaaatccggaaaaat 183  Q
    |||||| ||||||||||||||||    ||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  26190373 aaaaaagggtgtttagggggtttctgaattatgtaatccgaaaacatcatgtaacgcaccctattttttgaagtttccggattacaaaatccggaaaaat 26190472  T
Q  184 ccgttactc 192  Q
    |||| ||||    
T  26190473 ccgtaactc 26190481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 86 - 218
Target Start/End: Complemental strand, 38372354 - 38372221
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| ||| |||| ||||||| |  |||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| ||||||||    
T  38372354 aaaaagggtatttaaggggtttccgaattatgtaatccggaaacatcatgtaacccgccctatttttttaagtttccggattacaaaatccagaaaaatc 38372255  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaa 218  Q
    |||||||||       ||||||||||||||||||    
T  38372254 cgttactcattttttcaccctttaacaaaagaaa 38372221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 38640839 - 38640601
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggatt------gcaccatggaaaaaatggtgtttagggggttttcaga 112  Q
    ||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||      |||||||| |||||| |||||||| ||||| ||| ||    
T  38640839 tgttataaacatgttcagaattggtgttggtgctgtccggattacgtaatccggattgcatcagcaccatgaaaaaaagggtgttta-ggggtgttcgga 38640741  T
Q  113 ttatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatccgttactca--nnnnnnnaccctttaa 209  Q
    |||||||||||| | | ||||| |||||||||||| |||||||  ||||| ||||| |||||||| |||  || ||  ||||         |||||||||    
T  38640740 ttatgtaatccgaataaatcatttaacgcgccctattttttgagatttccagattataaaatccgaaaatctctgtagctcattttttttcaccctttaa 38640641  T
Q  210 caaaagaaaacaccattccgaattataaaatccgaaaact 249  Q
    |||| ||||||||||||||  ||||||||||||| |||||    
T  38640640 caaaggaaaacaccattccagattataaaatccggaaact 38640601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 92 - 254
Target Start/End: Complemental strand, 33487649 - 33487486
Alignment:
Q  92 ggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatccgttac 190  Q
    ||||||||||| |||| | |||||||||| ||| ||||||||| ||||||||||||| ||||||||||| ||||||||||||| |||||||| |||| ||    
T  33487649 ggtgtttagggagtttccggattatgtaacccgaaaacatcatataacgcgccctattttttgaagttttcggattacaaaattcggaaaaacccgtaac 33487550  T
Q  191 tcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaactaaagg 254  Q
    ||        ||||| ||||||| ||||||||||||||| ||||| ||||||| ||||| ||||    
T  33487549 tccatttttcaccctgtaacaaaggaaaacaccattccggattatgaaatccggaaactcaagg 33487486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 35 - 248
Target Start/End: Original strand, 36359604 - 36359825
Alignment:
Q  35 agaattggtgctggtgctgtccgaattacgtaatccggattgca------ccatggaaaaaat-ggtgtttagggggttttcagattatgtaatccggaa 127  Q
    |||||||||| ||||| |||| | ||||||||||| ||||||||      ||||| ||||||  ||||||||||||||||||||||||||||||||| ||    
T  36359604 agaattggtgatggtgttgtctggattacgtaatctggattgcatcaacaccatgaaaaaaaaaggtgtttagggggttttcagattatgtaatccgaaa 36359703  T
Q  128 acatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatccgttactcannnnnnnaccctttaacaaaagaaaaca-ccat 225  Q
    | ||||||| ||||| |||| |||||||  |||| ||||||||||||||| |||| ||||| |||||       ||||||||||||||||||||| ||||    
T  36359704 aaatcatgttacgcgtcctattttttgagatttctggattacaaaatccgaaaaattccgtaactca-tttttcaccctttaacaaaagaaaacacccat 36359802  T
Q  226 tccgaattataaaatccgaaaac 248  Q
    |||  ||||| ||||||| ||||    
T  36359803 tccagattatgaaatccggaaac 36359825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 86 - 176
Target Start/End: Complemental strand, 14111942 - 14111851
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccg 176  Q
    ||||| |||||||||||| |||||||||||||||||||  ||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  14111942 aaaaagggtgtttaggggattttcagattatgtaatccaaaaacatcatgtaacgcgccctattttttgaagtttctggattacaaaatccg 14111851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 85 - 192
Target Start/End: Original strand, 12465185 - 12465289
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatttt-tgaagtttccggattacaaaatccggaaaaat 183  Q
    ||||||||||||||||||| ||| | ||||   |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  12465185 aaaaaatggtgtttagggg-tttccggatt---taatccggaaacatcatgtaacacgccctattttttgaagtttccggattacaaaatccggaaaaat 12465280  T
Q  184 ccgttactc 192  Q
    |||| ||||    
T  12465281 ccgtaactc 12465289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 84 - 243
Target Start/End: Original strand, 37183856 - 37184016
Alignment:
Q  84 gaaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaa 182  Q
    ||||||| ||||||||| |||||| | |||||||||||| | ||| ||||||||||| |||||| |||||||||||||  ||||||||||||  ||||||    
T  37183856 gaaaaaagggtgtttagagggtttccggattatgtaatctgaaaatatcatgtaacgtgccctattttttgaagtttcaagattacaaaatctagaaaaa 37183955  T
Q  183 tccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    || ||||||||       |||| ||||||||||||||||  |||||| |||||| ||||||    
T  37183956 tctgttactcattttttcacccgttaacaaaagaaaacattattccggattatataatccg 37184016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 31929229 - 31929339
Alignment:
Q  133 atgtaacgcgccctattttt-gaagtttccggattacaaaatccggaaaaatccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaa 231  Q
    |||||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||       ||||||||||||||||||||| ||||||| |    
T  31929229 atgtaatgcgccctattttttgaaatttctggattacaaaatccggaaaaatccgttactca-tttttcaccctttaacaaaagaaaacatcattccgga 31929327  T
Q  232 ttataaaatccg 243  Q
    ||||| ||||||    
T  31929328 ttatataatccg 31929339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 86 - 186
Target Start/End: Original strand, 32842048 - 32842149
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatttt-tgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||| ||||| ||| ||||||||||||  |||| || || || ||||||||||||| |||||||||||||||||||||||||||||||||    
T  32842048 aaaaagggtgtttatggggtgttcggattatgtaatcttgaaaaattatctagcgcgccctattttttgaagtttccggattacaaaatccggaaaaatc 32842147  T
Q  185 cg 186  Q
    ||    
T  32842148 cg 32842149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 86 - 184
Target Start/End: Complemental strand, 8032316 - 8032217
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||| ||| ||| |||||||||||||||||| ||||||||| | ||||||| ||||||| ||||| |||||||||||||| |||||||    
T  8032316 aaaaagggtgtttaggaggtgttcggattatgtaatccggaaaaatcatgtaatgtgccctattttttgaaatttccagattacaaaatccgaaaaaatc 8032217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 29862657 - 29862591
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctattttt 152  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||  |||||||||||||||||    
T  29862657 aaaaatggtgtttagggggtttccggattatgtaatccggaaacatcacctaacgcgccctattttt 29862591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 31221415 - 31221504
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatc 174  Q
    ||||| ||||||||| |||||| | ||||||||||||| |||||||||||||||||||| || |||||||||||| ||||||||| ||||    
T  31221415 aaaaagggtgtttagagggtttccggattatgtaatccagaaacatcatgtaacgcgccatattttttgaagttttcggattacagaatc 31221504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 38641047 - 38640988
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggattgca 78  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||    
T  38641047 tgttacaaacatgttcagaattggtgttggtgctgtccgaattatgtaatccagattgca 38640988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 86 - 247
Target Start/End: Complemental strand, 27212753 - 27212591
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||| |||| || ||| | |||||||||||| ||| |||||||||||| ||||| |||||||  ||| |||||||||||||||| ||||| |    
T  27212753 aaaaagggtgttcagggtgtgttctggttatgtaatccgaaaaaatcatgtaacgcaccctattttttgagattttcggattacaaaatccgaaaaaacc 27212654  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaa 247  Q
    ||| |||||       ||||| ||||||| ||||||| || | || ||||| |||||||||||    
T  27212653 cgtaactcattttttcaccctataacaaaggaaaacatcagttcggattatgaaatccgaaaa 27212591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 28445413 - 28445578
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggattgc------accatggaaaaaatggtgtttagg--gggttttca 110  Q
    |||||||||||||||||||||| ||||||||| |||||| ||||||||||||| | |||      ||||| ||||||||||||||||||  |||| |||     
T  28445413 tgttacaaacatgttcagaattcgtgctggtgatgtccggattacgtaatccgaactgcatcggtaccat-gaaaaaatggtgtttagggagggtgttcg 28445511  T
Q  111 gattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccg 176  Q
    |||| | ||||| | |||  |||| || ||||||||| |||||||  ||| ||||||||||||||||    
T  28445512 gattttataatctgaaaaattcatttagcgcgccctattttttgagattttcggattacaaaatccg 28445578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 43388073 - 43388253
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggattgca------ccatggaaaaaatggtgtttagggggttttcaga 112  Q
    ||||| ||| |||||||||||||||| |||| ||||| ||||||||||||||||||||||      ||||| |||||| |||||||||| ||||||| ||    
T  43388073 tgttataaatatgttcagaattggtgttggtactgtctgaattacgtaatccggattgcatcagcaccatgaaaaaaagggtgtttaggaggttttcgga 43388172  T
Q  113 ttatgta-atccggaaacatcatgtaacgcgccctatttttgaag-tttccggattacaaaatccggaaaaatccgttactca 193  Q
    |||| |  ||  |  |  ||||||||| |||||||||||||  || |||||||||||||||||||  || ||||||| |||||    
T  43388173 ttattttgatgtg--attatcatgtaatgcgccctatttttttagatttccggattacaaaatccaaaagaatccgtaactca 43388253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 8739196 - 8739255
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggattgca 78  Q
    ||||||||||||||||||||||||||||||||| ||  | ||||||||||||| ||||||    
T  8739196 tgttacaaacatgttcagaattggtgctggtgcagtttggattacgtaatccgaattgca 8739255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 28108354 - 28108271
Alignment:
Q  157 tttccggattacaaaatccggaaaaatccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatc 241  Q
    |||||||||||||||||| ||||||| ||||||||||       | ||||||||||||||||||| ||||||| |||||| ||||    
T  28108354 tttccggattacaaaatctggaaaaacccgttactcattttctca-cctttaacaaaagaaaacatcattccggattatataatc 28108271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 302
Target Start/End: Complemental strand, 33487466 - 33487424
Alignment:
Q  260 aaaatagggcgcgcgagaaaacccacatggtgggaaaagtaat 302  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  33487466 aaaatagggcgcgcgaggaaacccacagggtgggaaaagtaat 33487424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 16429185 - 16429133
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccg 71  Q
    ||||||||||||||| |||||||||| |||||||||  | |||||||||||||    
T  16429185 tgttacaaacatgtttagaattggtgttggtgctgtttggattacgtaatccg 16429133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 186
Target Start/End: Complemental strand, 26095129 - 26095035
Alignment:
Q  93 gtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatccg 186  Q
    ||||||| ||||| ||| |||||||||||||| ||| |  ||||||||||| ||| ||||||  ||||  ||||||||||||| | |||||||||    
T  26095129 gtgtttatggggtgttcggattatgtaatccgaaaaaaatatgtaacgcgctctattttttgtggtttttggattacaaaatcagaaaaaatccg 26095035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 16429395 - 16429367
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctg 47  Q
    |||||||||||||||||||||||||||||    
T  16429395 tgttacaaacatgttcagaattggtgctg 16429367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 24471311 - 24471481
Alignment:
Q  7 gtgagatgaaactgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggattgcaccatggaaaaaatggtgttta-gggggt 105  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||    
T  24471311 gtgatatgaaactgttacaaacatgttcagaattgatgctggtgctgtccgaattacgtaatccggattacaccatggaaaaaagggtgtttaggggggt 24471410  T
Q  106 tttcagattatgtaatccggaaacatcatgtaacgcgccctatttttgaagtttccggattacaaaatccg 176  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24471411 tttcggattatgtaatccggaaacatcatgtaacgcgccctatttttgaagtttctggattacaaaatccg 24471481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 30829463 - 30829632
Alignment:
Q  7 gtgagatgaaactgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggattgcaccatggaaaaaatggtgtttagggggtt 106  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||||||||    
T  30829463 gtgatatgaaactgttacaaacatgttcagaatcggtgctggtgctgtccggattacgtaatttggattgcaccatggaaaaaagggtgtttagggggtt 30829562  T
Q  107 ttcagattatgtaatccggaaacatcatgtaacgcgccctatttttgaagtttccggattacaaaatccg 176  Q
    ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30829563 ttcggattatgtaatccgaaaacatcatgtaacgcgccctatttttgaagtttccggattacaaaatccg 30829632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 43319199 - 43319429
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggattgca------ccatggaaaaaatggtgtttagggggttttcaga 112  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||      ||||| ||||||  ||||||||||||||||| ||    
T  43319199 tgttacaaacatgttcagaattggtgatggtgctgtccggattacgtaatccggattgcatcagcaccatgaaaaaaagagtgtttagggggttttcgga 43319298  T
Q  113 ttatgtaatccggaaacatcatgtaacgcgccctatttttgaag-tttccggattacaaaatccggaaaaatccgttactcannnnnnnaccctttaaca 211  Q
    |||||||||||| ||| ||||||||||||||| |||||||  || ||||||||||||||||||||||||||||||| |||||       |||||||||||    
T  43319299 ttatgtaatccgaaaaaatcatgtaacgcgccatatttttttagatttccggattacaaaatccggaaaaatccgtaactcattttttcaccctttaaca 43319398  T
Q  212 aaagaaaacaccattccgaattataaaatcc 242  Q
    || ||||||||  ||||  ||||||||||||    
T  43319399 aaggaaaacactgttccagattataaaatcc 43319429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 32817687 - 32817845
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||||| |||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| |    
T  32817687 aaaaagggtgtttagggggttttcggattatgtaatctggaaacatcatgtaatgcgccctattttttgaagtttccggattacaaaatctggaaaaacc 32817786  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    |||||||||       ||||||||||||||||||||| ||||||| |||||| ||||||    
T  32817787 cgttactcattttttcaccctttaacaaaagaaaacatcattccggattatataatccg 32817845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 86 - 302
Target Start/End: Original strand, 34162797 - 34163023
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccgg-aaaaat 183  Q
    ||||| |||||||||||||||| | |||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| |||||     
T  34162797 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatctaacacgccctattttttgaagtttccggattacaaaatccggaaaaaac 34162896  T
Q  184 ccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaactaaagggtatt--------aaaatagggcgcgcga 275  Q
    |||  ||||        ||||| ||||||| ||||||||||||||| ||||| ||||||| ||||| |||||||||        |||| |||||||||||    
T  34162897 ccgcaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatccggaaactcaagggtatttttggaaaaaaaaagggcgcgcga 34162996  T
Q  276 gaaaacccacatggtgggaaaagtaat 302  Q
    | ||||||||  |||||||||||||||    
T  34162997 ggaaacccactgggtgggaaaagtaat 34163023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 86 - 241
Target Start/End: Complemental strand, 42546050 - 42545895
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||| ||||||||||||| ||| |||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  42546050 aaaaagggtgcttagggggttttcggatcatgttatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaatccggaaaaatc 42545951  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatc 241  Q
    ||||| |||       |||||||||||||||| |||||||||||| |||||| ||||    
T  42545950 cgttattca-tttttcaccctttaacaaaagataacaccattccggattatataatc 42545895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 85 - 241
Target Start/End: Original strand, 40908009 - 40908166
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaat 183  Q
    |||||| |||||||||||||||||| |||||||||||||| |||||||||||| | ||||| | ||||||||||||||||||| |||||| |  ||||||    
T  40908009 aaaaaagggtgtttagggggttttcggattatgtaatccgaaaacatcatgtagcacgcccaattttttgaagtttccggattgcaaaattctaaaaaat 40908108  T
Q  184 ccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatc 241  Q
    ||||||||||       |||||||||||||||||||||||||| || |||||||||||    
T  40908109 ccgttactcattttttcaccctttaacaaaagaaaacaccatttcggattataaaatc 40908166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 85 - 248
Target Start/End: Original strand, 18583619 - 18583783
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaat 183  Q
    |||||| |||||||||||||||| | |||||||||||||| |||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||| |    
T  18583619 aaaaaaaggtgtttagggggtttccggattatgtaatccgaaaacatcatgtaacgcgccctatttttttaagtttccagattacaaaatccggaaaagt 18583718  T
Q  184 ccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaac 248  Q
    |||| |||         ||||| ||||||| ||||||||||||||| ||||| ||||||||||||    
T  18583719 ccgtaacttcatttttcaccctataacaaaggaaaacaccattccggattatgaaatccgaaaac 18583783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 86 - 236
Target Start/End: Original strand, 40650751 - 40650903
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    |||||||||||||| ||||||| | ||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||| |||| |||||||    
T  40650751 aaaaatggtgtttaaggggtttccggattatgtaatccagaaacatcatgtaacacgccctattttttgaagtttccggattacaaattccgaaaaaatc 40650850  T
Q  185 cgttactca-nnnnnnnaccctttaacaaaagaaaacaccattccgaattata 236  Q
    |||||||||        || |||||||||||||||||||||||||| ||||||    
T  40650851 cgttactcatttttttcacgctttaacaaaagaaaacaccattccggattata 40650903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 85 - 242
Target Start/End: Original strand, 33611485 - 33611643
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaat 183  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||| ||||||    
T  33611485 aaaaaagggtgtttagggggtttccagattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccaaattacaaaatccgaaaaaat 33611584  T
Q  184 ccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatcc 242  Q
    |||| ||||        ||||| |||||||  |||||||||||| | ||||| ||||||    
T  33611585 ccgtaactccatttttcaccctataacaaagaaaaacaccattctggattatgaaatcc 33611643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 86 - 255
Target Start/End: Complemental strand, 17000461 - 17000292
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatt-tttgaagtttccggattacaaaatccggaaaaatc 184  Q
    |||||||||||||||||||||| | ||||||||||||| |||||||||| ||||| |||||||| ||||| ||||||| ||||||||||||||||||| |    
T  17000461 aaaaatggtgtttagggggtttccggattatgtaatccagaaacatcatctaacgtgccctattatttgatgtttccgaattacaaaatccggaaaaa-c 17000363  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaactaaaggg 255  Q
    ||| ||||        ||||| ||||||| ||||||||||||| | ||||| ||||||||||||| |||||    
T  17000362 cgtaactccatttttcaccctataacaaaggaaaacaccattctggattatgaaatccgaaaactcaaggg 17000292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 86 - 236
Target Start/End: Original strand, 15069917 - 15070069
Alignment:
Q  86 aaaaatggtgtttagggggttttcag-attatgtaatccggaaacatcatgtaacgcgccctatttt-tgaagtttccggattacaaaatccggaaaaat 183  Q
    ||||||||||||||||||| |||| | ||||| |||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||| ||| ||    
T  15069917 aaaaatggtgtttaggggggtttccggattatataatccggaaacatcatgtaacacgtcctattttttgaagtttccggattacaaaatccgaaaatat 15070016  T
Q  184 ccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattata 236  Q
    ||||||||||        |||||||||||||||||||| |||| || ||||||    
T  15070017 ccgttactcatttgttctccctttaacaaaagaaaacatcatttcggattata 15070069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 86 - 246
Target Start/End: Original strand, 45567952 - 45568114
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||||| ||| |||||||||  ||| |||||||| ||||||||| ||||||||||||||| |||||||||| |||||||| |    
T  45567952 aaaaagggtgtttagggggttttcggatcatgtaatccaaaaatatcatgtagcgcgccctattttttgaagtttccgaattacaaaattcggaaaaacc 45568051  T
Q  185 cgttactca-nnnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaa 246  Q
    |||||||||        ||||||||||||||||||| | ||||||| |||||| |||||||||    
T  45568052 cgttactcatttttttcaccctttaacaaaagaaaatatcattccggattatataatccgaaa 45568114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 86 - 236
Target Start/End: Complemental strand, 7011293 - 7011141
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccc--tatttttgaagtttccggattacaaaatcc-ggaaaaa 182  Q
    ||||||| |||||||||||||||| |||||  | || |||||||||||||||||||||||  | |||||||||||||||||||||||||||| | |||||    
T  7011293 aaaaatgatgtttagggggttttcggattacatgattcggaaacatcatgtaacgcgccctttttttttgaagtttccggattacaaaatccagaaaaaa 7011194  T
Q  183 tccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattata 236  Q
    |||||||||||       |||||||||||| |||||||||| ||||||||||||    
T  7011193 tccgttactca-tttttcaccctttaacaatagaaaacacctttccgaattata 7011141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 94 - 246
Target Start/End: Original strand, 41584754 - 41584907
Alignment:
Q  94 tgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatccgttactc 192  Q
    |||||||||||||| | |||||||||||||| ||||||||||||||  |||||| |||||||| ||||||||||||||||||| |||||| |||| |||     
T  41584754 tgtttagggggtttccggattatgtaatccgaaaacatcatgtaacatgccctagtttttgaaatttccggattacaaaatccagaaaaacccgtaactt 41584853  T
Q  193 annnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaa 246  Q
            ||||| ||||||||||||||||||||||  ||||| ||||||||||    
T  41584854 catttttcaccctataacaaaagaaaacaccattcctgattatgaaatccgaaa 41584907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 86 - 193
Target Start/End: Original strand, 44573172 - 44573280
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| || ||||| ||| ||| | |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  44573172 aaaaaaggagtttaagggatttccggattatgtaatccgaaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccgaaaaaatc 44573271  T
Q  185 cgttactca 193  Q
     ||||||||    
T  44573272 tgttactca 44573280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 28866707 - 28866806
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatttttgaagtttccggattacaaaatccggaaaaatcc 185  Q
    ||||| ||||||||| |||| |||||||||||||||||||||| |||||||| |||||||||||||| |   ||||||||||||||||||||||||||||    
T  28866707 aaaaagggtgtttagcgggtgttcagattatgtaatccggaaaaatcatgtagcgcgccctattttttatagttccggattacaaaatccggaaaaatcc 28866806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 92 - 193
Target Start/End: Original strand, 45046933 - 45047034
Alignment:
Q  92 ggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatttt-tgaagtttccggattacaaaatccggaaaaatccgttac 190  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||| | ||||| |||| |||||||| ||||||||||||||||||||||||||||||    
T  45046933 ggtgtttagggggtttccggattatgtaattcggaaacatcatgtaatg-gccctcttttttgaagttttcggattacaaaatccggaaaaatccgttac 45047031  T
Q  191 tca 193  Q
    |||    
T  45047032 tca 45047034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 85 - 192
Target Start/End: Complemental strand, 23442822 - 23442714
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaat 183  Q
    |||||| | ||||| |||||||| |  ||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||    
T  23442822 aaaaaaagatgtttggggggtttccgaattatataatccggaaacatcatgtaacgcgccctattttttgaagtttccagattataaaatccggaaaaat 23442723  T
Q  184 ccgttactc 192  Q
    |||| ||||    
T  23442722 ccgtaactc 23442714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 92 - 243
Target Start/End: Complemental strand, 49677560 - 49677418
Alignment:
Q  92 ggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatccgttac 190  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||          ||||| ||||||    
T  49677560 ggtgtttagggggtttctggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccagattac----------aaaattcgttac 49677471  T
Q  191 tcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    |||       ||||||||||||||||||||||||||||| |||||| ||||||    
T  49677470 tcattttttcaccctttaacaaaagaaaacaccattccggattatataatccg 49677418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 49786352 - 49786252
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaat 183  Q
    |||||| ||||||| |||||||| | |||||||||||||||||||||||||||||||| |||| ||||| |||||| |||||| ||||||||||||||||    
T  49786352 aaaaaagggtgttt-gggggtttccggattatgtaatccggaaacatcatgtaacgcgtcctattttttaaagttttcggattgcaaaatccggaaaaat 49786254  T
Q  184 cc 185  Q
    ||    
T  49786253 cc 49786252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 32542473 - 32542388
Alignment:
Q  92 ggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccg 176  Q
    ||||||||||||||||   |||||||||||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||||||    
T  32542473 ggtgtttagggggtttctggattatgtaatccgtaaacatcatgtaacgcaccctattttttgaagattccggattacaaaatccg 32542388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 34006342 - 34006246
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaa 181  Q
    ||||| |||||||| ||||| |||| ||||||||||||||||| |||||||| | |||||||| ||||||| ||||||||||| |||||||||||||    
T  34006342 aaaaagggtgtttatggggtgttcaaattatgtaatccggaaaaatcatgtagcccgccctattttttgaattttccggattaaaaaatccggaaaa 34006246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 77 - 248
Target Start/End: Complemental strand, 38950361 - 38950201
Alignment:
Q  77 caccatggaaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatttttgaagtttccggattacaaaatccg 176  Q
    ||||||| ||||||  |||||||||| |||||| |||||||||||| | ||| |||||||||||||||||||||||         ||||||||||||| |    
T  38950361 caccatgaaaaaaagagtgtttagggagttttcggattatgtaatctgaaaaaatcatgtaacgcgccctattttt---------ggattacaaaatctg 38950271  T
Q  177 gaaaaatccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaac 248  Q
    ||||||||||| |||||         | ||||||||| ||||| ||||||||||||||||||||||| ||||    
T  38950270 gaaaaatccgtaactcatttttca--cttttaacaaaggaaaataccattccgaattataaaatccggaaac 38950201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 800806 - 800969
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggattgcacca-----tggaaaaaatggtgtttagggggttttcagat 113  Q
    ||||| ||||||||||||||||||||||||||| |||||  ||||||||||||||   |||||        ||||||||||||||||||||| ||| |||    
T  800806 tgttataaacatgttcagaattggtgctggtgcagtccgcgttacgtaatccggacatcaccaacaccataaaaaaatggtgtttagggggtgttcggat 800905  T
Q  114 tatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccg 176  Q
    | | ||||||| ||| ||||  ||| |||||||| |||||||  ||| ||||||||||||||||    
T  800906 tctataatccgaaaaaatcaaataaagcgccctattttttgagattttcggattacaaaatccg 800969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 43318988 - 43319047
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggattgca 78  Q
    |||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||    
T  43318988 tgttacaaacatgttcagaattggtgctggtgttgtccagattacgtaatccggattgca 43319047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 247
Target Start/End: Complemental strand, 27794903 - 27794776
Alignment:
Q  120 atccggaaacatcatgtaacgcgccctatttttgaagtttccggattacaaaatccggaaaaatccgttactcannnnnnnaccctttaacaaaagaaaa 219  Q
    ||||| ||| ||||||||| |||||||||||||||  ||| |||||||||||||| | |||||||| | |||||       ||||| ||||||| |||||    
T  27794903 atccgaaaaaatcatgtaaagcgccctatttttgagattttcggattacaaaatctgaaaaaatccataactcattttttcaccctataacaaaggaaaa 27794804  T
Q  220 caccattccgaattataaaatccgaaaa 247  Q
    ||||| | || ||||| |||||||||||    
T  27794803 caccagttcggattatgaaatccgaaaa 27794776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 130 - 219
Target Start/End: Original strand, 52744937 - 52745027
Alignment:
Q  130 atcatgtaacgcgccctatttt-tgaagtttccggattacaaaatccggaaaaatccgttactcannnnnnnaccctttaacaaaagaaaa 219  Q
    |||||||| ||||||||||||| |||||||| | ||||||||||| |||||||||||||||||||       || ||||||||||||||||    
T  52744937 atcatgtagcgcgccctattttttgaagttttcagattacaaaattcggaaaaatccgttactcattttttcacactttaacaaaagaaaa 52745027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 38885236 - 38885164
Alignment:
Q  171 aatccggaaaaatccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    |||||||||||||| ||||||||       ||||||||||||||||||||||||||||| |||||| ||||||    
T  38885236 aatccggaaaaatctgttactcattttttcaccctttaacaaaagaaaacaccattccggattatataatccg 38885164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 26723564 - 26723660
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatttt-tgaagtttccggattacaaaatccggaaaaat 183  Q
    |||||| |||||||||||||| ||| |||||||     |||||| |||||||| | ||||||||||| ||||||||||||||||||||||||  ||||||    
T  26723564 aaaaaagggtgtttagggggtgttcggattatg-----cggaaaaatcatgtagc-cgccctattttttgaagtttccggattacaaaatccaaaaaaat 26723657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 9446103 - 9446155
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccg 71  Q
    ||||| ||||||||||||||||||||||||| |||| || |||||||||||||    
T  9446103 tgttataaacatgttcagaattggtgctggtactgttcggattacgtaatccg 9446155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 243
Target Start/End: Original strand, 6223821 - 6223972
Alignment:
Q  94 tgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta--tttttgaagtttccggattacaaaatccggaaaaatccgttact 191  Q
    |||||| ||||| ||| |||||||||||||  ||| ||||||||| |||| |||  |||||||||||| ||||||  ||||| || |||||||||| |||    
T  6223821 tgtttatggggtgttcggattatgtaatccaaaaaaatcatgtaatgcgctctatttttttgaagttttcggattgaaaaattcgaaaaaatccgtaact 6223920  T
Q  192 cannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    ||       ||||| ||||||| |||||||| | | || ||||| |||||||    
T  6223921 cattttttcaccctataacaaaggaaaacacgagttcggattatgaaatccg 6223972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 9445897 - 9445945
Alignment:
Q  22 tacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatcc 70  Q
    |||||| ||||| |||||||||||||||| |||||| ||||||||||||    
T  9445897 tacaaagatgtttagaattggtgctggtgttgtccggattacgtaatcc 9445945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 800603 - 800652
Alignment:
Q  22 tacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccg 71  Q
    ||||||||||||  ||||||||| ||||| |||||| |||||||||||||    
T  800603 tacaaacatgttttgaattggtgttggtgttgtccggattacgtaatccg 800652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 30829647 - 30829695
Alignment:
Q  201 accctttaacaaaagaaaacaccattccgaattataaaatccgaaaact 249  Q
    ||||| ||||||| ||||||||||||||| ||||| ||||||| |||||    
T  30829647 accctataacaaaggaaaacaccattccggattatgaaatccggaaact 30829695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 38885310 - 38885251
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccct 146  Q
    ||||| |||||||| ||||||| | ||||||||||| | ||||||||||||||| ||||||    
T  38885310 aaaaagggtgtttaaggggtttccggattatgtaat-ctgaaacatcatgtaacacgccct 38885251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 7 - 176
Target Start/End: Complemental strand, 33367090 - 33366920
Alignment:
Q  7 gtgagatgaaactgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggattgcaccatggaaaaaat-ggtgtttagggggt 105  Q
    |||| |||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||  |||||| |||||||    
T  33367090 gtgatatgaaactattacaaacatgttcagaattggtgctggtgctatccggattacgtaatccggtttgcaccatggaaaaaaaaggtgttaagggggt 33366991  T
Q  106 tttcagattatgtaatccggaaacatcatgtaacgcgccctatttttgaagtttccggattacaaaatccg 176  Q
    |||| |||||||||||||||||| ||||||||||||| | |||||||||||||| ||||||||||||||||    
T  33366990 tttcggattatgtaatccggaaatatcatgtaacgcgtcttatttttgaagttttcggattacaaaatccg 33366920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 86 - 255
Target Start/End: Original strand, 15995184 - 15995355
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta--tttttgaagtttccggattacaaaatccggaaaaat 183  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||  |||||||||||||| ||||||||||||||||||||     
T  15995184 aaaaagggtgtttagggggttttcggattatgtaatccggaaacatcatgcaacgcgccctatttttttgaagtttcccgattacaaaatccggaaaaac 15995283  T
Q  184 ccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaactaaaggg 255  Q
    |||||||| |       ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15995284 ccgttactaattttttcaccctttaacaaaagaaaacaccattccggattataaaatccgaaaactaaaggg 15995355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 92 - 307
Target Start/End: Original strand, 25217868 - 25218096
Alignment:
Q  92 ggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatttt-tgaagtttccggattacaaaatccggaaaaatccgttac 190  Q
    |||||||||||| ||| | ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  25217868 ggtgtttagggg-tttccggattatgtaatccggaaacatcatgtaacgcaccctattttttgaagtttccggattacaaaatccgaaaaaatccgttac 25217966  T
Q  191 tcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaactaaagggtatt-------------aaaatagggcgcgcgaga 277  Q
    |||       ||||||||||||||||||||| |||| || ||||||||||||  ||||| || | ||||             |||||||||||||||||     
T  25217967 tcattttttcaccctttaacaaaagaaaacatcattgcggattataaaatccagaaactcaaagatatttttggaagaaaaaaaaatagggcgcgcgagg 25218066  T
Q  278 aaacccacatggtgggaaaagtaattccca 307  Q
    ||||||| ||||||||||||||||||||||    
T  25218067 aaacccagatggtgggaaaagtaattccca 25218096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 45153862 - 45154020
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| | |||||| |    
T  45153862 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccagattacaaaattcagaaaaacc 45153961  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    |||||||||       ||||||||||||||||||||| ||||||| |||||| ||||||    
T  45153962 cgttactcattttttcaccctttaacaaaagaaaacatcattccggattatataatccg 45154020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 86 - 221
Target Start/End: Original strand, 17474870 - 17475006
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    |||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  17474870 aaaaattgtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttaaagtttccggattacaaaatccggaaaaatc 17474969  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaaca 221  Q
    |||||||||       ||| |||||||||||||||||    
T  17474970 cgttactcattttttcaccttttaacaaaagaaaaca 17475006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 86 - 229
Target Start/End: Complemental strand, 39447245 - 39447101
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||| ||||||| |||||||||||||||| ||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||    
T  39447245 aaaaagggtgtttatggggtttccagattatgtaatccgaaaacatcatgtaatgcgccctattttttgaagttttcggattacaaaatccggaaaaatc 39447146  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccg 229  Q
    |||||||||       ||||||||||||||||||||| |||||||    
T  39447145 cgttactcattttttcaccctttaacaaaagaaaacatcattccg 39447101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 33452514 - 33452672
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| ||||||||||| |||| | |||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||    
T  33452514 aaaaagggtgtttagggagtttccggattatgtgatccggaaacatcatgtaacgcgccctattttttgaagtttccgaattacaaaatccagaaaaatc 33452613  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    |||||||||       ||||||||||||||||||||| |||| || |||||| ||||||    
T  33452614 cgttactcatttttccaccctttaacaaaagaaaacatcatttcggattatataatccg 33452672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 32187940 - 32188099
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| |||||| |    
T  32187940 aaaaatggtgtttcgggggtttccggattatgtaatccggaaacatcatgtaactcgccctattttttgaagtttccagattacaaaatccagaaaaacc 32188039  T
Q  185 cgttactca-nnnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    |||||||||        ||||||||||||||||||||| ||||||| |||||| ||||||    
T  32188040 cgttactcatttttttcaccctttaacaaaagaaaacatcattccggattatacaatccg 32188099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 88 - 241
Target Start/End: Original strand, 36949018 - 36949172
Alignment:
Q  88 aaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatccg 186  Q
    |||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||    
T  36949018 aaatggtgtttagggggtttccggattatgtaatccgaaaacatcatgtaacgcgccctattttttgaagtttgcagattacaaaatccggaaaaatccg 36949117  T
Q  187 ttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatc 241  Q
    | ||||        ||||| ||||||| ||||||||||||||| ||||| |||||    
T  36949118 taactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatc 36949172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 92 - 236
Target Start/End: Original strand, 41510505 - 41510651
Alignment:
Q  92 ggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatccgttac 190  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||    
T  41510505 ggtgtttagggggtttccagattatgtaatccagaaacatcatgtaacgcgccctattttttgaagtttccggattacgaaatctggaaaaatccgttac 41510604  T
Q  191 tca-nnnnnnnaccctttaacaaaagaaaacaccattccgaattata 236  Q
    |||        ||||||| |||||||||||||||||| || ||||||    
T  41510605 tcatttttttcacccttttacaaaagaaaacaccatttcggattata 41510651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 86 - 242
Target Start/End: Original strand, 44465798 - 44465956
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaac-atcatgtaacgcgccctatttt-tgaagtttccggattacaaaatccggaaaaat 183  Q
    ||||| |||||||||||||||| | || ||||||||||  |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  44465798 aaaaagggtgtttagggggtttccggagtatgtaatccataaactatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaat 44465897  T
Q  184 ccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatcc 242  Q
    ||||||||||       ||||||||||||||||||||| ||||| | |||||| |||||    
T  44465898 ccgttactcattttttcaccctttaacaaaagaaaacatcattctggattatataatcc 44465956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 86 - 192
Target Start/End: Original strand, 4268309 - 4268416
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||| ||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||| ||||| |    
T  4268309 aaaaagggtgtttatggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttttggattacaaaatccgaaaaaacc 4268408  T
Q  185 cgttactc 192  Q
    | ||||||    
T  4268409 cattactc 4268416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 86 - 176
Target Start/End: Complemental strand, 36875068 - 36874977
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccg 176  Q
    |||||||||||| || |||||| | |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  36875068 aaaaatggtgttcagagggtttccggattatgtaatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaatccg 36874977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 25 - 249
Target Start/End: Complemental strand, 25715510 - 25715282
Alignment:
Q  25 aaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggatt------gcaccatggaaaaaatggtgtttagggggttttcagattatgt 118  Q
    ||||||||| |||||||||| ||||| |||||| |||||||||||||||||      |||||||| ||||||||||||||     || ||| ||||||||    
T  25715510 aaacatgtttagaattggtgttggtgttgtccggattacgtaatccggattgcatcagcaccatgaaaaaaatggtgttt-----gtgttcggattatgt 25715416  T
Q  119 aatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccg--gaaaaatccgttactcannnnnnnaccctttaacaaaag 215  Q
    |||||| ||| |||| |||||||||||||| ||||||  |||  |||||||||| ||||   ||||||  || |||||       ||||||||||||| |    
T  25715415 aatccgaaaaaatcaggtaacgcgccctatcttttgagatttttggattacaaagtccgaaaaaaaatttgtaactcattttttcaccctttaacaaagg 25715316  T
Q  216 aaaacaccattccgaattataaaatccgaaaact 249  Q
    |||||||||||||| ||||||||||||| |||||    
T  25715315 aaaacaccattccggattataaaatccggaaact 25715282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 9847424 - 9847660
Alignment:
Q  20 gttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggattgca------ccatggaaaaaatggtgtttagggggttttcagat 113  Q
    |||||||| ||||| |||||||||| |||||||||||  |||||||||||| |||||||      ||||| |||||| ||||||| |  ||| ||| |||    
T  9847424 gttacaaatatgtttagaattggtgttggtgctgtccagattacgtaatccagattgcatcagcaccatgaaaaaaaaggtgtttggatggtgttcggat 9847523  T
Q  114 tatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatccgttactcannnnnnnaccctttaacaa 212  Q
    |||||||| || ||| |||||||||||||||| | |||||||  ||| |||||||||||||| ||||||||| || |||||       || |||||||||    
T  9847524 tatgtaatacgaaaaaatcatgtaacgcgcccaattttttgagattttcggattacaaaatctggaaaaatcagtaactcattttttcactctttaacaa 9847623  T
Q  213 aagaaaacaccattccgaattataaaatccgaaaact 249  Q
    |  ||||  |||||||  ||||||||||||| |||||    
T  9847624 agaaaaatgccattccagattataaaatccggaaact 9847660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 86 - 176
Target Start/End: Original strand, 41854970 - 41855061
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccg 176  Q
    ||||| |||||||||||||||| | ||| ||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||    
T  41854970 aaaaagggtgtttagggggtttccggatcatgtaatccggaaacatcatgtaacacaccctattttttgaagtttccggattacaaaatccg 41855061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 86 - 176
Target Start/End: Complemental strand, 42894460 - 42894369
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccg 176  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||| | ||||||    
T  42894460 aaaaatggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgtcctatttttttaagtttccggattatataatccg 42894369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 186
Target Start/End: Original strand, 41203258 - 41203358
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatttttgaagtttccggattacaaaatccggaaaaatcc 185  Q
    ||||| |||||||| ||||| ||| ||||||||||||| |||| || ||||| | | |  | |||||| |||||||||||||||||||||||||||||||    
T  41203258 aaaaagggtgtttacggggtgttcggattatgtaatccagaaaaattatgtagcaccctatttttttgtagtttccggattacaaaatccggaaaaatcc 41203357  T
Q  186 g 186  Q
    |    
T  41203358 g 41203358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 9847215 - 9847274
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggattgca 78  Q
    |||||||||||||||||||||||||| ||||| |||||  ||||||||||||||||||||    
T  9847215 tgttacaaacatgttcagaattggtgttggtgttgtccagattacgtaatccggattgca 9847274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 249
Target Start/End: Complemental strand, 34517183 - 34517020
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatttttgaag-tttccggattacaaaatccggaaaaatc 184  Q
    |||||||||||||| ||||| ||  |||||||||||||| ||| |||||||||||||||||||||||  || |||   |||||||||||||| ||||||     
T  34517183 aaaaatggtgtttaaggggtatttggattatgtaatccgaaaa-atcatgtaacgcgccctattttttgagatttttcgattacaaaatccgaaaaaatt 34517085  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaact 249  Q
    ||| |||||       ||| | ||||||| |||||||||| | || | ||| |||||||||||||    
T  34517084 cgtaactcattttttcaccgtataacaaaggaaaacaccagttcggaatatgaaatccgaaaact 34517020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 193
Target Start/End: Complemental strand, 5507495 - 5507391
Alignment:
Q  92 ggtgtttagggggttttcagattatgtaatccggaaaca--tcatgtaacgcgccctattttt-gaagtttccggattacaaaatccggaaaaatccgtt 188  Q
    |||||||||||||| ||| |||||| ||||||| ||| |  |||||||||||| | ||||||| |||||||  |||||||||||| || ||||||| ||     
T  5507495 ggtgtttagggggtgttcggattatataatccgaaaaaaaatcatgtaacgcgtcttattttttgaagtttttggattacaaaattcgaaaaaatctgta 5507396  T
Q  189 actca 193  Q
    |||||    
T  5507395 actca 5507391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 174
Target Start/End: Original strand, 38308875 - 38308954
Alignment:
Q  96 tttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatc 174  Q
    |||| ||||| ||| |||||| ||||||||||| ||||  || ||||||||| |||||||||||| ||||||||| ||||    
T  38308875 tttaaggggtgttcggattatataatccggaaaaatcaaatagcgcgccctattttttgaagttttcggattacataatc 38308954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 34519540 - 34519594
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccgga 73  Q
    ||||||||||||||||||||||| || |||||| ||  | |||||||||||||||    
T  34519540 tgttacaaacatgttcagaattgatgttggtgcagtttggattacgtaatccgga 34519594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 41855076 - 41855118
Alignment:
Q  201 accctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    |||||||||||| |||||||||||||||| |||||| ||||||    
T  41855076 accctttaacaacagaaaacaccattccggattatataatccg 41855118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 9e-58; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 86 - 295
Target Start/End: Original strand, 28230544 - 28230760
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28230544 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcaagtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaatc 28230643  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaactaaagggtatt-------aaaatagggcgcgcgaga 277  Q
    |||||||||       ||||||||||||||||||||||||||| | ||||||||||||||||||| ||||| |||       ||||||| |||||||||     
T  28230644 cgttactca-ttttttaccctttaacaaaagaaaacaccattctggattataaaatccgaaaactcaagggcattttcgggaaaaatagagcgcgcgagg 28230742  T
Q  278 aaacccacatggtgggaa 295  Q
    ||||||||| ||||||||    
T  28230743 aaacccacagggtgggaa 28230760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 86 - 232
Target Start/End: Complemental strand, 43737207 - 43737060
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43737207 aaaaagggtgtttagggggtttccggattatgtaatccgaaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaatc 43737108  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaat 232  Q
    |||||||||       ||||||||||||||||||||||||||||||||    
T  43737107 cgttactcattttttcaccctttaacaaaagaaaacaccattccgaat 43737060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 86 - 243
Target Start/End: Complemental strand, 3936191 - 3936033
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  3936191 aaaaagggtgtttagggggtttttggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacc 3936092  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    |||||||||       || |||||||||||||||||| ||||||| |||||| ||||||    
T  3936091 cgttactcattttttcactctttaacaaaagaaaacatcattccggattatataatccg 3936033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 85 - 249
Target Start/End: Complemental strand, 36629289 - 36629123
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaat 183  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||| || |||||||||||||||||||||    
T  36629289 aaaaaatggtgtttagagggtttccagattatgtaatccggaaacatcatgtaacgcgccctatttttttaagttaccagattacaaaatccggaaaaat 36629190  T
Q  184 ccgttactcannnnnnnaccctttaacaaaag-aaaacaccattccgaattataaaatccgaaaact 249  Q
    ||||||||||       ||||| ||||||||| |||||||||||||  ||||||||||||| |||||    
T  36629189 ccgttactcattttttcaccctctaacaaaagaaaaacaccattccatattataaaatccggaaact 36629123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 85 - 248
Target Start/End: Complemental strand, 47202578 - 47202414
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaat 183  Q
    |||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  47202578 aaaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatctggaaaaat 47202479  T
Q  184 ccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaac 248  Q
    |||| ||||        ||||| ||||||||||||||||||||||| ||||| ||||||| ||||    
T  47202478 ccgtaactccatttttcaccctataacaaaagaaaacaccattccggattatgaaatccggaaac 47202414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 85 - 187
Target Start/End: Complemental strand, 8154983 - 8154880
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaat 183  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8154983 aaaaaagggtgtttagggggttttcggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaat 8154884  T
Q  184 ccgt 187  Q
    ||||    
T  8154883 ccgt 8154880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 86 - 240
Target Start/End: Original strand, 24042264 - 24042419
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |    
T  24042264 aaaaatggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccttattttttgaagtttccggattacaaaatccggaaaaacc 24042363  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaat 240  Q
    ||| ||||        ||||| || |||| ||||||||||||||||||||| ||||    
T  24042364 cgtaactccatttttcaccctatatcaaaggaaaacaccattccgaattatgaaat 24042419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 86 - 241
Target Start/End: Original strand, 19225674 - 19225831
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccgg-aaaaat 183  Q
    |||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| ||||| ||||||||||||  |||||||||||||||| ||||||    
T  19225674 aaaaatggtgtttaggggatttccggattatgtaatccggaaacatcatgtaacgcaccctattttttgaagtttttggattacaaaatccggaaaaaat 19225773  T
Q  184 ccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatc 241  Q
    ||||||||||       ||||||||||||||||||||| |||| ||||||||| ||||    
T  19225774 ccgttactcattttttcaccctttaacaaaagaaaacatcatttcgaattatataatc 19225831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 86 - 307
Target Start/End: Original strand, 36468613 - 36468841
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatttt-tgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||| | |||||||||||| | |||||||||||||| ||||||||||| ||||||||||  |||||||||||||||||||||    
T  36468613 aaaaagggtgtttagggggtttccggattatgtaatctg-aaacatcatgtaacacgccctattttttgaagtttccatattacaaaatccggaaaaatc 36468711  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaactaaagggtatt--------aaaatagggcgcgcgag 276  Q
    |||||||||       | ||||||||||||||||||| ||||||||||||||||||  | ||| | ||||| |||        ||||||| |||||||||    
T  36468712 cgttactcattttttca-cctttaacaaaagaaaacatcattccgaattataaaatttggaaattcaagggcatttttgaaaaaaaatagagcgcgcgag 36468810  T
Q  277 aaaacccacatggtgggaaaagtaattccca 307  Q
     ||||||| | |||||||||||||| |||||    
T  36468811 taaacccatagggtgggaaaagtaaatccca 36468841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 42925717 - 42925875
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||| | |||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| |    
T  42925717 aaaaaaggtgtttagggggtttccggattatgtaatccgaaaacatcatgtaatgcgccctattttttgaagtttccggattacaaaatcaggaaaaacc 42925816  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    ||| ||||        ||||| ||||||| ||||||||||||||| ||||| |||||||    
T  42925817 cgtaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatccg 42925875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 37518371 - 37518512
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    |||||||||||||||||||||| | ||||||||||||||||||| ||||||||| ||||||| ||||||||||||| |||||| ||||||||||||||||    
T  37518371 aaaaatggtgtttagggggtttccggattatgtaatccggaaacttcatgtaacacgccctattttttgaagtttctggattataaaatccggaaaaatc 37518470  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccatt 226  Q
    ||||||| |       ||||||||| ||||||||||| ||||    
T  37518471 cgttacttattttttcaccctttaataaaagaaaacatcatt 37518512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 90 - 249
Target Start/End: Complemental strand, 36408450 - 36408291
Alignment:
Q  90 atggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctattttt-gaagtttccggattacaaaatccggaaaaatccgtt 188  Q
    |||||||||| | ||||| | ||||||||||||||||||||||||||| |||||| ||||||| |||||||| |||||||||||||||||||||||||||    
T  36408450 atggtgtttatgaggtttccggattatgtaatccggaaacatcatgtatcgcgccttattttttgaagtttctggattacaaaatccggaaaaatccgtt 36408351  T
Q  189 actca-nnnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaact 249  Q
    |||||        ||||||||||  ||||||||||||||   ||||||||||||||||||||    
T  36408350 actcatttttttcaccctttaac--aagaaaacaccattttaaattataaaatccgaaaact 36408291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 87 - 243
Target Start/End: Original strand, 3304835 - 3304993
Alignment:
Q  87 aaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta--tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    |||| ||||||| |||||||||  |||||||||||||||||| |||||||||| | |||||  ||||||||||||| |||||||||||||||||||||||    
T  3304835 aaaagggtgtttggggggtttttggattatgtaatccggaaatatcatgtaacacaccctatttttttgaagtttctggattacaaaatccggaaaaatc 3304934  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    ||| ||||        ||||| ||||||| |||||||||||||| |||||| |||||||    
T  3304935 cgtaactccatttttcaccctataacaaaggaaaacaccattccaaattatgaaatccg 3304993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 85 - 248
Target Start/End: Complemental strand, 31643125 - 31642961
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaat 183  Q
    |||||| ||||||| |||||||| | ||||||||||||||||||||||||||||| | ||||| ||||||||||||||  ||||||| |||| |||||||    
T  31643125 aaaaaagggtgtttggggggtttccggattatgtaatccggaaacatcatgtaacacaccctattttttgaagtttccaaattacaagatccagaaaaat 31643026  T
Q  184 ccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaac 248  Q
    |||| ||||        ||||| ||||||| ||||||||||||||  ||||| ||||||| ||||    
T  31643025 ccgtaactccatttttcaccctataacaaacgaaaacaccattccagattatgaaatccggaaac 31642961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 114 - 243
Target Start/End: Original strand, 42877149 - 42877279
Alignment:
Q  114 tatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatccgttactcannnnnnnaccctttaacaa 212  Q
    |||||||||||||||||| ||||||||||||||| |||||  | ||||| ||||||||||||||||||||  |||||||||       ||||||||||||    
T  42877149 tatgtaatccggaaacattatgtaacgcgccctattttttttattttcccgattacaaaatccggaaaaacacgttactcattttttcaccctttaacaa 42877248  T
Q  213 aagaaaacaccattccgaattataaaatccg 243  Q
    ||||||||| ||||||| |||||| ||||||    
T  42877249 aagaaaacatcattccggattatataatccg 42877279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 33574125 - 33574210
Alignment:
Q  101 ggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatcc 185  Q
    ||||||||| |||||||||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||||||||  ||||||||    
T  33574125 ggggttttcggattatgtaatccgaaaacatcatgtaacgcaccctattttttaaagtttccggattacaaaatccaaaaaaatcc 33574210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 249
Target Start/End: Complemental strand, 6467780 - 6467615
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccgga--ttacaaaatccggaaaaa 182  Q
    ||||| |||||||||||||| ||| |||||||||||||| | | |||||||||| | ||||| |||||||  |||| |||  ||||| ||| ||||||||    
T  6467780 aaaaagggtgtttagggggtgttcggattatgtaatccgaacaaatcatgtaacacaccctattttttgagatttctggattttacataattcggaaaaa 6467681  T
Q  183 tccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaact 249  Q
    ||||| |||||       ||| ||||||||| |||||||||||||||||| |||||||||| |||||    
T  6467680 tccgtaactca-tttttcaccatttaacaaaggaaaacaccattccgaatcataaaatccggaaact 6467615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 31985594 - 31985685
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta---tttttgaagtttccggattacaaaatc 174  Q
    |||||||||||||| ||||| |||  ||||||||||||| ||| ||||||||||||||||||   ||||||| |||| ||||||||||||||    
T  31985594 aaaaatggtgtttaaggggtgttcgaattatgtaatccgaaaaaatcatgtaacgcgccctattttttttgaggttttcggattacaaaatc 31985685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 7115347 - 7115413
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctattttt 152  Q
    ||||||||||||||||||||||||||||||| |||| || ||| |||| ||||||| ||||||||||    
T  7115347 aaaaatggtgtttagggggttttcagattatataattcgaaaaaatcaagtaacgcaccctattttt 7115413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 9151850 - 9151789
Alignment:
Q  133 atgtaacgcgccctattttt-gaagtttccggattacaaaatccggaaaaatccgttactca 193  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||| | ||||||||    
T  9151850 atgtaatgcgccctattttttgaagtttccggattacaaaatccggaaaaacctgttactca 9151789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 227
Target Start/End: Complemental strand, 33151292 - 33151148
Alignment:
Q  85 aaaaaatg-gtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat--ttttgaagtttccggattacaaaatccggaaaa 181  Q
    |||||||| ||||||||||| ||| | |||||||||||||| | ||||||| ||| |||||||||  |||| ||||||||| |||||||||||   ||||    
T  33151292 aaaaaatgagtgtttaggggatttccggattatgtaatccgaagacatcatataatgcgccctattttttttaagtttccgaattacaaaatc--taaaa 33151195  T
Q  182 atccgttactca-nnnnnnnaccctttaacaaaagaaaacaccattc 227  Q
    ||||||| ||||        ||||||||||||||||||||| |||||    
T  33151194 atccgttcctcatttttttcaccctttaacaaaagaaaacatcattc 33151148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 5731193 - 5731247
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccgga 73  Q
    ||||| |||||||||||||||||||| |||||||||||  |||||||||||||||    
T  5731193 tgttataaacatgttcagaattggtgttggtgctgtcccgattacgtaatccgga 5731247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 28349174 - 28349227
Alignment:
Q  130 atcatgtaacgcgccctatttttgaagtttccggattacaaaatccggaaaaat 183  Q
    |||||||| | | ||||||||||||||||| || ||||||||||||||||||||    
T  28349174 atcatgtagcacaccctatttttgaagttttcgaattacaaaatccggaaaaat 28349227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 5730987 - 5731036
Alignment:
Q  22 tacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccg 71  Q
    |||||||||||| ||||||| |||||||| |||||  |||||||||||||    
T  5730987 tacaaacatgtttagaattgttgctggtggtgtcctgattacgtaatccg 5731036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 26555130 - 26555183
Alignment:
Q  99 agggggttttcagattatgtaatccggaaacatcatgtaacgcgccctattttt 152  Q
    ||||||| ||| ||||| |||||||  ||| |||||||||||||||||||||||    
T  26555130 agggggtgttcggattaggtaatccaaaaaaatcatgtaacgcgccctattttt 26555183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 28346167 - 28346122
Alignment:
Q  148 tttttgaagtttccggattacaaaatccggaaaaatccgttactca 193  Q
    ||||||||||||| |||||||||||| |||||| |||||| |||||    
T  28346167 tttttgaagtttctggattacaaaattcggaaacatccgtaactca 28346122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 8214298 - 8214350
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccg 71  Q
    |||| ||||||||||||||||||||| || ||| ||  |||||||||||||||    
T  8214298 tgttgcaaacatgttcagaattggtgttgatgcagtttgaattacgtaatccg 8214350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 94 - 306
Target Start/End: Original strand, 4508386 - 4508605
Alignment:
Q  94 tgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccct-atttttgaagtttccggattacaaaatccggaaaaatccgttactc 192  Q
    |||||||||| ||| | |||||| |||||||||||||||||||||| |||||| ||||||||| |||| |||||| ||||||||||||||||||||||||    
T  4508386 tgtttaggggatttccggattatataatccggaaacatcatgtaacacgccctaatttttgaaatttctggattataaaatccggaaaaatccgttactc 4508485  T
Q  193 annnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaactaaagggtatt------aaaatagggcgcgcgagaaaacccaca 286  Q
    |       ||||| ||||||||||||||||||||| | ||||||||||||| ||||| ||||  |||      ||||||||||||||||| |||||||||    
T  4508486 attttttcaccctctaacaaaagaaaacaccattctggattataaaatccggaaacttaaggacatttttggaaaaatagggcgcgcgaggaaacccaca 4508585  T
Q  287 tggtgggaaaagtaattccc 306  Q
     |||||||||||||| ||||    
T  4508586 gggtgggaaaagtaactccc 4508605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 86 - 255
Target Start/End: Original strand, 3717359 - 3717529
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccct-atttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    |||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||  |    
T  3717359 aaaaattgtgtttaggaggtttccagattatataatccggaaacatcatgtaacgcgccctaatttttgaagtttccggattacaaaattcggaaaagcc 3717458  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaactaaaggg 255  Q
    | |||||||       |||||||||||||||||||||||||||   ||||||||||||| ||||| |||||    
T  3717459 cattactcattttttcaccctttaacaaaagaaaacaccattcaagattataaaatccggaaactcaaggg 3717529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 86 - 243
Target Start/End: Complemental strand, 7412910 - 7412753
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |    
T  7412910 aaaaagggtgtttagggg-ttttcggattatgtaatccggaaacatcatgtaacacgccctattttttgaagtttccggattacaaaatccggaaaaacc 7412812  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    |||||||||       ||||||||||||||||||||| ||||||  |||||| ||||||    
T  7412811 cgttactcattttttcaccctttaacaaaagaaaacatcattccagattatataatccg 7412753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 86 - 227
Target Start/End: Complemental strand, 17264493 - 17264351
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  17264493 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccagattacaaaatccggaaaaatc 17264394  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattc 227  Q
    |||||||||       ||||| ||||||||||||||| |||||    
T  17264393 cgttactcattttttcaccctgtaacaaaagaaaacatcattc 17264351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 85 - 248
Target Start/End: Complemental strand, 32035197 - 32035033
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaat 183  Q
    |||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32035197 aaaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaat 32035098  T
Q  184 ccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaac 248  Q
    |||| ||||        | | | ||||||||||||||| ||||||  ||||| ||||||||||||    
T  32035097 ccgtaactccatttttcatcatataacaaaagaaaacatcattccagattatgaaatccgaaaac 32035033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 94 - 248
Target Start/End: Original strand, 33413431 - 33413585
Alignment:
Q  94 tgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatttttgaagtttccggattacaaaatccggaaaaatccgttactca 193  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||     
T  33413431 tgtttagggggtttccagattatgtaatctggaaacatcatgtaacgcgccctatttttgaagtttccggattacaaaattcagaaaaattcgtaactcc 33413530  T
Q  194 nnnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaac 248  Q
           ||||| ||||||| ||||||||||||||| ||||| ||||||| ||||    
T  33413531 atttttcaccctataacaaaggaaaacaccattccggattatgaaatccggaaac 33413585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 14587636 - 14587794
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||    
T  14587636 aaaaatggtgtttagggggtttatggattatgtaatcaggaaacatcatgtaacgcgccctattttttaaagttttcggattacaaaatccggaaaaatc 14587735  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    | |||||||       ||||||||||||||||||| || |||||  |||||| ||||||    
T  14587736 ccttactcattttttcaccctttaacaaaagaaaatacaattccagattatataatccg 14587794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 86 - 249
Target Start/End: Complemental strand, 5699641 - 5699477
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| || ||||| |    
T  5699641 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttcaagtttccggattacaaaattcgaaaaaacc 5699542  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaact 249  Q
    ||| ||||        ||||| ||||||| ||||||||||||||| ||||| ||||||| |||||    
T  5699541 cgtaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatccggaaact 5699477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 86 - 249
Target Start/End: Original strand, 1945606 - 1945770
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    |||||||| ||||||||| | |||||||||| |||||||||||  | ||||||||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  1945606 aaaaatggggtttagggg-tgttcagattatataatccggaaaatttatgtaacgcaccctagtttttgaagttttcggattacaaaatccggaaaaatc 1945704  T
Q  185 cgttactcannnnnnnaccctttaacaaaag-aaaacaccattccgaattataaaatccgaaaact 249  Q
    ||| |||||       |||||||  |||||| |||||||||||||| |||||||||||||||||||    
T  1945705 cgtaactcattttttcaccctttgtcaaaagaaaaacaccattccggattataaaatccgaaaact 1945770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 86 - 302
Target Start/End: Complemental strand, 23406879 - 23406655
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    |||||||||||||||||||||| | ||||||||||||| |||||||||  ||||||||||||| |||||||||||||||||||| |||| ||||||||      
T  23406879 aaaaatggtgtttagggggtttccggattatgtaatccagaaacatcaactaacgcgccctattttttgaagtttccggattacgaaattcggaaaaact 23406780  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaactaaagggtatt-------aaaatagggcgcgcgaga 277  Q
    ||| ||||        ||||| ||||||| ||||||||||||||| ||||  ||||||| ||| | || || |||       |||||||||| ||||||     
T  23406779 cgtaactccatttttcaccctataacaaaggaaaacaccattccggattacgaaatccggaaaatcaatggcatttttgaaaaaaatagggcccgcgagg 23406680  T
Q  278 aaacccacatggtgggaaaagtaat 302  Q
    ||| ||||| |||||||||||||||    
T  23406679 aaatccacagggtgggaaaagtaat 23406655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 2813300 - 2813460
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaa--atccggaaaaa 182  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||||||||||| | || || ||||||||||||||||||||||||  |||||||||||    
T  2813300 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacacaccttattttttgaagtttccggattacaaaatatccggaaaaa 2813399  T
Q  183 tccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    || || ||||        ||||| ||| ||| ||||||||||||||||||||| |||||||    
T  2813400 tctgtaactccatttttcaccctataataaaggaaaacaccattccgaattatgaaatccg 2813460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 186
Target Start/End: Complemental strand, 9905197 - 9905100
Alignment:
Q  90 atggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatccg 186  Q
    |||| ||||||||||| ||| |||||||||||||||||| |||| ||| |||||||||| ||||||| |||||| |||||||||||||||||||||||    
T  9905197 atggcgtttagggggtgttcggattatgtaatccggaaaaatcacgtagcgcgccctattttttgaaatttccgaattacaaaatccggaaaaatccg 9905100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 5638945 - 5638879
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctattttt 152  Q
    ||||| |||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||    
T  5638945 aaaaagggtgtttagggatttttcaaattatgtaatccggaaacatcatgtaacgcgccctattttt 5638879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 24604438 - 24604538
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    |||||||||||||| ||||| ||| |||||||||||||| | | |||||||||  ||||||| ||||||||||||  |||||||||||| ||||||||||    
T  24604438 aaaaatggtgtttaaggggtgttcggattatgtaatccgaagaaatcatgtaagacgccctattttttgaagtttttggattacaaaattcggaaaaatc 24604537  T
Q  185 c 185  Q
    |    
T  24604538 c 24604538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 17501227 - 17501175
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccg 71  Q
    ||||||||||||||||||||||||| ||| ||||||||| |||||||||||||    
T  17501227 tgttacaaacatgttcagaattggtcctgatgctgtccggattacgtaatccg 17501175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 17501017 - 17500967
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatc 69  Q
    ||||||||||||||||||| |||||||||||| |||||| |||||||||||    
T  17501017 tgttacaaacatgttcagatttggtgctggtgttgtccggattacgtaatc 17500967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 21517557 - 21517623
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctattttt 152  Q
    |||||||||||||| ||||||| |  |||||||||||||||||||| ||||| | ||||||||||||    
T  21517557 aaaaatggtgtttaaggggtttccgaattatgtaatccggaaacattatgtagcacgccctattttt 21517623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 84 - 182
Target Start/End: Original strand, 29289701 - 29289799
Alignment:
Q  84 gaaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatttttgaagtttccggattacaaaatccggaaaaa 182  Q
    |||||||||||||||| ||||| |||||||||| ||||||||||| ||||  || || | ||||||||| | | || | |||||||||||||| |||||    
T  29289701 gaaaaaatggtgtttaaggggtgttcagattatataatccggaaaaatcaaatagcgtgtcctattttttagggtttcagattacaaaatccgaaaaaa 29289799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 124
Target Start/End: Complemental strand, 2539534 - 2539496
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccg 124  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  2539534 aaaaagggtgtttagggggtttccagattatgtaatccg 2539496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 85 - 243
Target Start/End: Complemental strand, 35142158 - 35142002
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccct-atttttgaagtttccggattacaaaatccggaaaaat 183  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  35142158 aaaaaatggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctaatttttgaagtttccggattacaaaacccggaaaaat 35142059  T
Q  184 ccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    ||||||||         |||||||||||||||| |||||||||||| |||||| ||||||    
T  35142058 ccgttact---tttttcaccctttaacaaaagataacaccattccggattatataatccg 35142002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 35 - 241
Target Start/End: Complemental strand, 48304131 - 48303918
Alignment:
Q  35 agaattggtgctggtgctgtccgaattacgtaatccggattgca------ccatggaaaaaatggtgtttagggggttttcagattatgtaatccggaaa 128  Q
    |||||||||| |||||||||| | ||||||||||||||||||||      ||||| ||||||||||||| ||||||||||| |||||||||||| | |||    
T  48304131 agaattggtgatggtgctgtctggattacgtaatccggattgcatcaccaccatgaaaaaaatggtgttgagggggttttcggattatgtaatctgaaaa 48304032  T
Q  129 catcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatccgttactcannnnnnnaccctttaacaaaagaaaacaccattc 227  Q
     |||||||||| | ||||| |||||||  ||||||||||||||||||||||||||||||| |||||       ||||||||||||| |||||||||||||    
T  48304031 aatcatgtaacacaccctattttttgagatttccggattacaaaatccggaaaaatccgtaactcattttttcaccctttaacaaaggaaaacaccattc 48303932  T
Q  228 cgaattataaaatc 241  Q
    || ||||| |||||    
T  48303931 cggattatgaaatc 48303918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 45244541 - 45244238
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggattgca------ccatggaaaaaatggtgtttagggggttttcaga 112  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||      ||||| |||||| |||||||    ||||||||||    
T  45244541 tgttacaaacatgttcagaattggtgctcgtgctgtccggattacgtaatccagattgcatcagcaccatgaaaaaaagggtgttt----ggttttcaga 45244446  T
Q  113 ttatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatccgttactcannnnnnnaccctttaaca 211  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||  ||| || |||||||||||||||||||||| | |||||       | | |||||||    
T  45244445 ttatgtaatccgaaaaaatcatgtaacgcgccctattttttgagattttcgaattacaaaatccggaaaaatccataactcattttttcatcttttaaca 45244346  T
Q  212 aaagaaaacaccattccgaattataaaatccgaaaac-taaagggtatt-------aaaatagggcgcgcgagaaaacccacatggtgggaaaagtaatt 303  Q
    || |||||||| |||||| ||||| || ||||||||| | |||| ||||       ||||||||||||||||||||| ||| | ||||| |||||||| |    
T  45244345 aaggaaaacacaattccggattattaattccgaaaacttcaaggatatttttgaaaaaaatagggcgcgcgagaaaaaccatagggtggaaaaagtaaat 45244246  T
Q  304 cccataaa 311  Q
    ||| ||||    
T  45244245 cccttaaa 45244238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 85 - 249
Target Start/End: Complemental strand, 47302103 - 47301938
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaat 183  Q
    |||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||    
T  47302103 aaaaaagggtgtttaggaggttttcggattatgtaatccggaaacatcatgtaacgcgccttatttttttaagtttccggattacaaaatccggaaaaat 47302004  T
Q  184 ccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaact 249  Q
    || | ||||        ||||| ||||||| ||||||||||||||||||||| |||||||||||||    
T  47302003 ccataactccatttttcaccctataacaaaggaaaacaccattccgaattatgaaatccgaaaact 47301938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 86 - 242
Target Start/End: Original strand, 47740008 - 47740165
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  47740008 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatctggaaaaatc 47740107  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatcc 242  Q
     ||| ||||       ||||||||||||||||||||| ||||||| |||||| |||||    
T  47740108 tgttgctcattttttcaccctttaacaaaagaaaacatcattccggattatataatcc 47740165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 86 - 241
Target Start/End: Original strand, 51540690 - 51540848
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||| ||||||| | ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||    
T  51540690 aaaaacggtgtttaaggggtttccggattatgtaattcggaaacatcatgtaacgcgccctattttttgaagtttccggattccaaaatccagaaaaatc 51540789  T
Q  185 cgttactca--nnnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatc 241  Q
    |||||||||         |||||||||||||||||||||||||| || |||||||||||    
T  51540790 cgttactcattttttttcaccctttaacaaaagaaaacaccatttcggattataaaatc 51540848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 38977824 - 38977982
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||||| |||||||||||||  ||||| |||||||||||||||| |||||||||||||||||||||||||||  ||||||||    
T  38977824 aaaaaaggtgtttagggggttttcggattatgtaatcccaaaacaccatgtaacgcgccctattttttgaagtttccggattacaaaatctagaaaaatc 38977923  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    ||||||| |       |||||||||||||| |||||||||||||  |||||| ||||||    
T  38977924 cgttacttattttttcaccctttaacaaaataaaacaccattccagattatataatccg 38977982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 86 - 227
Target Start/End: Complemental strand, 39149892 - 39149751
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatttttgaagtttccggattacaaaatccggaaaaatcc 185  Q
    |||||||||||||||||||||| | ||||||||||||||||||||  ||||||||||||||||||||  |||||| ||||||||||||||||||||||||    
T  39149892 aaaaatggtgtttagggggtttccggattatgtaatccggaaacactatgtaacgcgccctattttttgagtttctggattacaaaatccggaaaaatcc 39149793  T
Q  186 gttactcannnnnnnaccctttaacaaaagaaaacaccattc 227  Q
    ||| || |       |||||||||||||||||||||| ||||    
T  39149792 gttgctaattttttcaccctttaacaaaagaaaacacaattc 39149751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 86 - 228
Target Start/End: Original strand, 46622860 - 46623004
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccgg-attacaaaatccggaaaaat 183  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||  ||| |||||||||||||||    
T  46622860 aaaaatggtgtttagggggtttccagattatgtaatccggaaacatcatgtaacgtgtcctattttttgaagtttccggttttataaaatccggaaaaat 46622959  T
Q  184 ccgttactcannnnnnnaccctttaacaaaagaaaacaccattcc 228  Q
    ||||||||||       | | ||||||||||||||||| ||||||    
T  46622960 ccgttactcattttttcatcatttaacaaaagaaaacatcattcc 46623004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 123 - 241
Target Start/End: Original strand, 34821509 - 34821628
Alignment:
Q  123 cggaaacatcatgtaacgcgccctatttt-tgaagtttccggattacaaaatccggaaaaatccgttactcannnnnnnaccctttaacaaaagaaaaca 221  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||    
T  34821509 cggaaacatcaggtaacgcgccctattttttgaagtttccggattacaaaatccggaaaattccgttactcattttttcaccctttaacaaaagaaaaca 34821608  T
Q  222 ccattccgaattataaaatc 241  Q
    |||||||| |||||| ||||    
T  34821609 ccattccggattatataatc 34821628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 86 - 242
Target Start/End: Complemental strand, 51258485 - 51258329
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    |||||||||||||||||||| ||| |||||||||||||| ||| || |||||||||||||||| ||||||| |||  |||||||||||||||||||||||    
T  51258485 aaaaatggtgtttagggggtgttcggattatgtaatccgaaaaaattatgtaacgcgccctattttttgaaatttatggattacaaaatccggaaaaatc 51258386  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatcc 242  Q
    ||| |||||       ||||||||||||| |||||||| |||||| ||||| ||||||    
T  51258385 cgtaactca-tttttcaccctttaacaaaggaaaacacaattccggattatgaaatcc 51258329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 3902882 - 3903040
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||| | |||||||||||||  |||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||| |    
T  3902882 aaaaagggtgtttagggggtttccggattatgtaatccaaaaacatcatgtaacgcgctctattttttgaagttttcggattacaaaatccggaaaaacc 3902981  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
     || ||||        ||||| ||||||| ||||||||||||||| ||||| |||||||    
T  3902982 agtaactccacttttcaccctataacaaaggaaaacaccattccggattatgaaatccg 3903040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 86 - 255
Target Start/End: Complemental strand, 50716335 - 50716165
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||| | |||||||||||| |||||||||||||||| |||||||| ||||||||||| |||||||||||||||| ||||| |    
T  50716335 aaaaagggtgtttagggggtttccggattatgtaatctggaaacatcatgtaacacgccctattttttgaagttttcggattacaaaatccgaaaaaacc 50716236  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaactaaaggg 255  Q
    ||| ||||        ||||| ||||||| ||||| ||||||||| ||||| |||| || ||||| |||||    
T  50716235 cgtaactccatttttcaccctataacaaaggaaaataccattccggattatgaaattcggaaactcaaggg 50716165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 86 - 255
Target Start/End: Original strand, 50796512 - 50796682
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||| | |||||||||||| |||||||||||||||| ||||||| |||||||||||| |||||||||||||||| ||||| |    
T  50796512 aaaaagggtgtttagggggtttccggattatgtaatctggaaacatcatgtaacacgccctattttttgaagttttcggattacaaaatccgaaaaaacc 50796611  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaactaaaggg 255  Q
    ||| ||||        ||||| ||||||| ||||| ||||||||| ||||| |||| || ||||| |||||    
T  50796612 cgtaactccatttttcaccctataacaaaggaaaataccattccggattatgaaattcggaaactcaaggg 50796682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 85 - 243
Target Start/End: Original strand, 2358697 - 2358857
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta--tttttgaagtttccggattacaaaatccggaaaaa 182  Q
    |||||| ||||||| | |||||| | |||||||||| |||||||||||||||||| |||||||  |||||||||||||||||||||||||||| | ||||    
T  2358697 aaaaaagggtgtttggagggtttccggattatgtaagccggaaacatcatgtaacacgccctatttttttgaagtttccggattacaaaatccaggaaaa 2358796  T
Q  183 tccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    ||||| ||||        ||||| ||||||| ||||||||||||||| ||||| |||||||    
T  2358797 tccgtaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatccg 2358857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 86 - 180
Target Start/End: Original strand, 34821419 - 34821514
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaa 180  Q
    |||||||||||||||||||||| | |||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||    
T  34821419 aaaaatggtgtttagggggtttccggattatgtaatccgaaaacatcatgtaacgcgctctattttttgaagtttccggattacaaaattcggaaa 34821514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 32025137 - 32025000
Alignment:
Q  21 ttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggattgc------accatggaaaaaatggtgtttagggggttttcagatt 114  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| | |||      |||||| ||||||||||||||||||||| ||||||||    
T  32025137 ttacaaacatgttcagaattggtgctggtgttgtccgaattacgtaatccgaactgcatcaggaccatgaaaaaaatggtgtttagggggtgttcagatt 32025038  T
Q  115 atgtaatccggaaacatcatgtaacgcgccctattttt 152  Q
     | ||||||| ||| ||||| ||  |||||||||||||    
T  32025037 ctataatccgaaaaaatcatatagtgcgccctattttt 32025000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 92 - 247
Target Start/End: Original strand, 3352148 - 3352305
Alignment:
Q  92 ggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatccgttac 190  Q
    |||||||||||||||| |  |||||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||  |||||||| ||||||    
T  3352148 ggtgtttagggggtttccgaattatgtaatccggaaacatcatgtaacgcaccctatttttttaagtttcctgattacaaaatttggaaaaattcgttac 3352247  T
Q  191 tca-nnnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaa 247  Q
    |||        |||||||||||||| |||||| ||||  | |||||||||||||||||    
T  3352248 tcatttttttcaccctttaacaaaaaaaaacatcattttggattataaaatccgaaaa 3352305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 52777315 - 52777223
Alignment:
Q  84 gaaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatttttgaagtttccggattacaaaatccg 176  Q
    ||||||| |||||||||||||||| |  ||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||    
T  52777315 gaaaaaagggtgtttagggggtttccttattatgtaatccggaaacatcatgtaaagtgctctatttttgaagtttccggattacaaaatccg 52777223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 501216 - 501314
Alignment:
Q  86 aaaaatggtgtttagggggttttcag-attatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaa 182  Q
    ||||| |||||||||||||||||| | |||||| ||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||    
T  501216 aaaaaaggtgtttagggggttttccggattatgcaatccggaaacatcatgtaacgcgccctattttttgaagtttttggattacaaaatccggaaaaa 501314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 99 - 248
Target Start/End: Complemental strand, 3937458 - 3937308
Alignment:
Q  99 agggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatccgttactcannnn 197  Q
    |||| ||||||  |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||  ||| ||||         
T  3937458 agggtgttttcgaattatgtaatccagaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaattcggaaaaactcgtaactccattt 3937359  T
Q  198 nnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaac 248  Q
       | ||| ||||||| ||||||||||||| | ||||||||||||| ||||    
T  3937358 ttcatcctataacaaaggaaaacaccattctggattataaaatccggaaac 3937308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 86 - 191
Target Start/End: Complemental strand, 33438604 - 33438499
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctattttt-gaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||||||||||| | |||||| || |||||||||||||||| |||||||||||||||||||||||| |||||||  |||||||||||| | ||||||||    
T  33438604 aaaaatggtgttttgagggtttccacattatgtaatccggaa-catcatgtaacgcgccctattttttgaagtttttggattacaaaattcagaaaaatc 33438506  T
Q  185 cgttact 191  Q
    |||||||    
T  33438505 cgttact 33438499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 85 - 182
Target Start/End: Complemental strand, 28873087 - 28872989
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaa 182  Q
    |||||| ||||||||||||||| |  ||||||||||||||||||||| |||||||||| |||| |||||||| ||| ||||||| ||||||| ||||||    
T  28873087 aaaaaagggtgtttagggggttgttggattatgtaatccggaaacataatgtaacgcgtcctattttttgaaattttcggattataaaatccagaaaaa 28872989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 47123135 - 47123033
Alignment:
Q  140 gcgccctattttt-gaagtttccggattacaaaatccggaaaaatccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaa 238  Q
    ||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||       ||||||||||||||||||||| ||||||  |||||| |    
T  47123135 gcgccctattttttgaagtttccggattacaaaattcggaaaaacccgttactcattttttcaccctttaacaaaagaaaacatcattccagattatata 47123036  T
Q  239 atc 241  Q
    |||    
T  47123035 atc 47123033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 47130501 - 47130399
Alignment:
Q  140 gcgccctattttt-gaagtttccggattacaaaatccggaaaaatccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaa 238  Q
    ||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||       ||||||||||||||||||||| ||||||  |||||| |    
T  47130501 gcgccctattttttgaagtttccggattacaaaattcggaaaaacccgttactcattttttcaccctttaacaaaagaaaacatcattccagattatata 47130402  T
Q  239 atc 241  Q
    |||    
T  47130401 atc 47130399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 8735337 - 8735278
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggattgca 78  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  8735337 tgttataaacatgttcagaattggtgctggtgctgtccgaatttcgtaatctggattgca 8735278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 9087578 - 9087519
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggattgca 78  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  9087578 tgttataaacatgttcagaattggtgctggtgctgtccgaatttcgtaatctggattgca 9087519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 43473044 - 43473111
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctattttt 152  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||| || || |||||||    
T  43473044 aaaaaatggtgtttagggggtttccggattatgtaatccggaaacatcatgtaatgcaccatattttt 43473111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 187
Target Start/End: Original strand, 49096311 - 49096405
Alignment:
Q  94 tgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatttttgaag-tttccggattacaaaatccggaaaaatccgt 187  Q
    |||||||||||| ||  ||||||||||| || ||| ||||||||||  ||| |||||||  || |||||||||||||||||||||||||||||||    
T  49096311 tgtttagggggtgtttggattatgtaattcgaaaaaatcatgtaacatgccatattttttgagatttccggattacaaaatccggaaaaatccgt 49096405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 8735138 - 8735090
Alignment:
Q  201 accctttaacaaaagaaaacaccattccgaattataaaatccgaaaact 249  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  8735138 accctttaacaaaggaaaacaccattccgaattatgaaatccgaaaact 8735090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 9087379 - 9087331
Alignment:
Q  201 accctttaacaaaagaaaacaccattccgaattataaaatccgaaaact 249  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  9087379 accctttaacaaaggaaaacaccattccgaattatgaaatccgaaaact 9087331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 30721881 - 30721974
Alignment:
Q  86 aaaaatggtgtttagggg-gttttcagattatgtaatccggaaacatcatgtaac---gcgccctatttt-tgaagtttccggattacaaaatc 174  Q
    |||||||||||||||||| || ||| |||||||||||||| ||| |||||||||    |||||||||||| |||||||| ||||||||||||||    
T  30721881 aaaaatggtgtttaggggagtgttcggattatgtaatccgaaaaaatcatgtaatattgcgccctattttttgaagttttcggattacaaaatc 30721974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 45244750 - 45244691
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggattgca 78  Q
    ||||| |||||||||||||||||||| ||||  |||||| ||||||||||||||||||||    
T  45244750 tgttataaacatgttcagaattggtgatggtattgtccggattacgtaatccggattgca 45244691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 42936636 - 42936588
Alignment:
Q  201 accctttaacaaaagaaaacaccattccgaattataaaatccgaaaact 249  Q
    ||||||||||||| ||||||||||||||| ||||| ||||||| |||||    
T  42936636 accctttaacaaaggaaaacaccattccggattatgaaatccggaaact 42936588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 8735544 - 8735493
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatcc 70  Q
    ||||||||||||||||| |||||||| || || |||||| ||||||||||||    
T  8735544 tgttacaaacatgttcataattggtgttgatgttgtccggattacgtaatcc 8735493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 9087785 - 9087734
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatcc 70  Q
    ||||||||||||||||| |||||||| || || |||||| ||||||||||||    
T  9087785 tgttacaaacatgttcataattggtgttgatgttgtccggattacgtaatcc 9087734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 183
Target Start/End: Complemental strand, 42936720 - 42936685
Alignment:
Q  148 tttttgaagtttccggattacaaaatccggaaaaat 183  Q
    |||||||||||| |||||||||||||||||||||||    
T  42936720 tttttgaagttttcggattacaaaatccggaaaaat 42936685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 28830284 - 28830325
Alignment:
Q  201 accctttaacaaaagaaaacaccattccgaattataaaatcc 242  Q
    |||||||||||||| ||||||||||| | |||||||||||||    
T  28830284 accctttaacaaaaaaaaacaccatttcaaattataaaatcc 28830325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 33700724 - 33700683
Alignment:
Q  201 accctttaacaaaagaaaacaccattccgaattataaaatcc 242  Q
    ||||||||||||| ||||||||||||||| ||||| ||||||    
T  33700724 accctttaacaaaggaaaacaccattccggattatgaaatcc 33700683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 42937052 - 42937088
Alignment:
Q  147 atttttgaagtttccggattacaaaatccggaaaaat 183  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  42937052 atttttgatgtttccggattacaaaatccgaaaaaat 42937088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 8e-46; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 86 - 243
Target Start/End: Complemental strand, 19835611 - 19835453
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctattttt-gaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||| |    
T  19835611 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcaccctatttttcaaagtttccggattacaaaatccggaaaaacc 19835512  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    |||||||||       ||||||||||||||||||||| ||||||| |||||| ||||||    
T  19835511 cgttactcattttttcaccctttaacaaaagaaaacatcattccggattatataatccg 19835453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 84 - 243
Target Start/End: Original strand, 54631537 - 54631697
Alignment:
Q  84 gaaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaa 182  Q
    |||||||  ||||||||||||||| | |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  54631537 gaaaaaaatgtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccatactttttgaagtttccggattacaaaatccggaaaaa 54631636  T
Q  183 tccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
     ||||||||||       ||||||||||||||||||||  ||||||| |||||| ||||||    
T  54631637 cccgttactcatttttccaccctttaacaaaagaaaacgtcattccggattatataatccg 54631697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 85 - 243
Target Start/End: Original strand, 17933212 - 17933371
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaat 183  Q
    |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||    
T  17933212 aaaaaagggtgtttaaggggtttccagattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttctggattacaaaatctggaaaaat 17933311  T
Q  184 ccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    |||||| |||       ||||||||||||||||||||| ||||||  |||||| ||||||    
T  17933312 ccgttattcatttttgcaccctttaacaaaagaaaacatcattccagattatataatccg 17933371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 86 - 236
Target Start/End: Original strand, 25491471 - 25491622
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||      
T  25491471 aaaaaaggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaatccgaaaaaact 25491570  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattata 236  Q
    |||||||||       ||||||||||||||||||||| ||||||| ||||||    
T  25491571 cgttactcattttttcaccctttaacaaaagaaaacatcattccggattata 25491622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 84 - 226
Target Start/End: Original strand, 48319139 - 48319281
Alignment:
Q  84 gaaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaa 182  Q
    ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  48319139 gaaaaaaaggtgtttagggggttttcggattatgtaatccagaaacatcatgtaacgcgccctattttttgaagtttccggattac-aaatccggaaaaa 48319237  T
Q  183 tccgttactcannnnnnnaccctttaacaaaagaaaacaccatt 226  Q
    ||||| |||||       ||||||||||||||||||||| ||||    
T  48319238 tccgtcactcattttttcaccctttaacaaaagaaaacatcatt 48319281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 85 - 247
Target Start/End: Complemental strand, 23523998 - 23523835
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaat 183  Q
    |||||| ||||||||||||||||   |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||    
T  23523998 aaaaaagggtgtttagggggtttctggattatgtaatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaatccgaaaaaat 23523899  T
Q  184 ccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaa 247  Q
    |||| ||||        ||||| ||||||| ||||||| ||||||||||||| |||||| ||||    
T  23523898 ccgtaactccatttttcaccctctaacaaaggaaaacatcattccgaattatgaaatcctaaaa 23523835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 92 - 221
Target Start/End: Complemental strand, 7931743 - 7931613
Alignment:
Q  92 ggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatccgttac 190  Q
    |||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||    
T  7931743 ggtgtttagggggtttccggattatgtaatccggaaacataatgtaacgcgccctattttttgaagtttccggattgcaaaatccggaaaaacccgttac 7931644  T
Q  191 tcannnnnnnaccctttaacaaaagaaaaca 221  Q
    |||       |||||||||||||||||||||    
T  7931643 tcattttttcaccctttaacaaaagaaaaca 7931613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 86 - 193
Target Start/End: Complemental strand, 40703755 - 40703647
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||    
T  40703755 aaaaagggtgtttagggggttttcaggttatgtaatccggaaacatcatgtaatgcaccctattttttgaaatttccggattacaaaatccggaaaaatc 40703656  T
Q  185 cgttactca 193  Q
    |||||||||    
T  40703655 cgttactca 40703647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 86 - 255
Target Start/End: Original strand, 55052695 - 55052865
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||| | |||||| ||||||||||||||||| |||| ||||||| |||||||||||||||||||||| |||||||||||| |    
T  55052695 aaaaagggtgtttagggggtttccggattatataatccggaaacatcatctaacacgccctattttttgaagtttccggattacataatccggaaaaacc 55052794  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaactaaaggg 255  Q
    ||| ||||        ||||| ||||||| ||||||||||||||| ||||| ||||||| ||||| |||||    
T  55052795 cgtaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatccggaaactcaaggg 55052865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 86 - 249
Target Start/End: Original strand, 25539024 - 25539188
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    |||||| ||||||||||||||| | ||||||||||||| |||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||| |    
T  25539024 aaaaatagtgtttagggggtttccggattatgtaatccagaaacatcatgtaacatgccctattttttgaagtttccggattacaaaatccggaaaaacc 25539123  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaact 249  Q
    ||| ||||        ||| | ||||||| ||||||||||||||| ||||| ||||||| |||||    
T  25539124 cgtaactccatttttcaccatataacaaaggaaaacaccattccggattatgaaatccggaaact 25539188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 86 - 193
Target Start/End: Original strand, 25752520 - 25752628
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||| ||||||||| |||||||||||| ||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||    
T  25752520 aaaaagggtgtttatggggttttcggattatgtaatctggaaacatcatgtaatgcgccctattttttgaaatttccggattacaaaatccggaaaaatc 25752619  T
Q  185 cgttactca 193  Q
    | |||||||    
T  25752620 cattactca 25752628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 101 - 248
Target Start/End: Complemental strand, 32441887 - 32441739
Alignment:
Q  101 ggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatccgttactcannnnnn 199  Q
    ||||||| | ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||| | ||||           
T  32441887 ggggtttccggattatgtaatccggaaacatcatgtaacgcgcgctattttttgaagtttccggattacaaaatccagaaaaatccttaactccattttt 32441788  T
Q  200 naccctttaacaaaagaaaacaccattccgaattataaaatccgaaaac 248  Q
     ||||| ||||||| ||||||||||||||| ||||| ||||||| ||||    
T  32441787 caccctataacaaaggaaaacaccattccggattatgaaatccggaaac 32441739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 86 - 243
Target Start/End: Complemental strand, 38536261 - 38536103
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||| | |||||||||||| |||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| |    
T  38536261 aaaaaaggtgtttagggggtttccggattatgtaatctggaaacatcatgtaacacgccctattttttgaagtttccgaattacaaaatccggaaaaacc 38536162  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    ||| |||         ||||| ||||||| |||||||||||| || ||||| |||||||    
T  38536161 cgtaacttcatttttcaccctataacaaaggaaaacaccatttcggattatgaaatccg 38536103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 86 - 246
Target Start/End: Original strand, 46440350 - 46440512
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||| ||||| |||||||| |    
T  46440350 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgtcctatttttttaagtttccggattataaaattcggaaaaacc 46440449  T
Q  185 cgttactca-nnnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaa 246  Q
    ||||| |||        | ||||||||||||||| ||| |||||||||||||| |||| ||||    
T  46440450 cgttattcatttttttcatcctttaacaaaagaatacatcattccgaattatataatctgaaa 46440512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 118 - 242
Target Start/End: Original strand, 6228919 - 6229044
Alignment:
Q  118 taatccggaaacatcatgtaacgcgccctatttt-tgaagtttccggattacaaaatccggaaaaatccgttactcannnnnnnaccctttaacaaaaga 216  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||  |||        ||||| ||||||| ||    
T  6228919 taatccggaaacatcatgtaacgcgccctattttttgaagtttccgggttacaaaatccggaaaaatccgtagctccatttttcaccctataacaaagga 6229018  T
Q  217 aaacaccattccgaattataaaatcc 242  Q
    ||||||||||||| ||||| ||||||    
T  6229019 aaacaccattccggattatgaaatcc 6229044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 8106483 - 8106387
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaa 181  Q
    |||||||||||||||||||| ||| ||||||||||| |||||| |||||||| |||||||||| ||||||||||| |||||||||||||||||||||    
T  8106483 aaaaatggtgtttagggggtgttcggattatgtaatacggaaaaatcatgtagcgcgccctattttttgaagttttcggattacaaaatccggaaaa 8106387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 34972956 - 34972864
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccg 176  Q
    ||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| |||| |||||||| ||||||||||||||    
T  34972956 aaaaaatggtgtttagggggttttcggattatgtagtccgaaaacatcatgtaacgcgccctatttttttaagtttccagattacaaaatccg 34972864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 86 - 249
Target Start/End: Original strand, 3703326 - 3703490
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    |||||||||||||||||||| |||  ||||||||||||| ||| |||||||||| || |||| |||||||||||| |||||||||||||||| |||||||    
T  3703326 aaaaatggtgtttagggggtgttcgaattatgtaatccgaaaaaatcatgtaacacgtcctattttttgaagttttcggattacaaaatccgaaaaaatc 3703425  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaact 249  Q
    ||| |||||       ||||| ||||||| |||||||| | | || ||||| ||||||| |||||    
T  3703426 cgtaactcattttttcaccctataacaaaggaaaacactagttcggattatgaaatccggaaact 3703490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 85 - 248
Target Start/End: Complemental strand, 49397100 - 49396936
Alignment:
Q  85 aaaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctattttt-gaagtttccggattacaaaatccggaaaaat 183  Q
    |||||||| |||||| ||| ||||| |||||||||||||  ||||||| ||||||||  ||||||||| |||||||||||||||||||||||||||||||    
T  49397100 aaaaaatgatgtttaagggattttcggattatgtaatccaaaaacatcttgtaacgcatcctattttttgaagtttccggattacaaaatccggaaaaat 49397001  T
Q  184 ccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaac 248  Q
    |||| ||||        ||||| ||| ||| ||||||| ||||||| ||||| ||||||| ||||    
T  49397000 ccgtaactccatttttcaccctataataaaggaaaacatcattccggattatgaaatccggaaac 49396936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 86 - 255
Target Start/End: Original strand, 2506107 - 2506280
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccct--atttttgaagtttccggattacaaaatccggaaaaat 183  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||   ||||||| ||||| | || |||||||  ||||||||    
T  2506107 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgcccttattttttgatgtttctgaatcacaaaatttggaaaaat 2506206  T
Q  184 ccgttactca-nnnnnnnaccctttaacaaaagaaaacacca-ttccgaattataaaatccgaaaactaaaggg 255  Q
    ||||||||||        ||||||||||||||||||||| || || |  ||||||||||||| ||||| |||||    
T  2506207 ccgttactcatttttttcaccctttaacaaaagaaaacatcattttctgattataaaatccggaaactcaaggg 2506280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 29822704 - 29822603
Alignment:
Q  92 ggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctattttt-gaagtttccggattacaaaatccggaaaaatccgttac 190  Q
    |||||||| ||||||| | |||||||||||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||| |||| ||    
T  29822704 ggtgtttatggggtttccggattatgtaatccgaaaacatcatgtaacgcgctgtattttttgaagtttccggattacaaaatccggaaaaacccgtaac 29822605  T
Q  191 tc 192  Q
    ||    
T  29822604 tc 29822603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 53894108 - 53894218
Alignment:
Q  127 aacatcatgtaacgcgccctatttt-tgaagtttccggattacaaaatccggaaaaatccgttactcannnnnnnaccctttaacaaaagaaaacaccat 225  Q
    ||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||| |||||| |||       ||||||||||||||||||||| |||    
T  53894108 aacatcatgtaacgcgccctattttttgaagtttcctgattgcaaaatccggaaaaacccgttagtcattttttcaccctttaacaaaagaaaacatcat 53894207  T
Q  226 tccgaattata 236  Q
    |||| ||||||    
T  53894208 tccggattata 53894218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 87 - 242
Target Start/End: Original strand, 6003748 - 6003906
Alignment:
Q  87 aaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccc---tatttttgaagtttccggattacaaaatccggaaaaat 183  Q
    |||| |||||||||||||||| | ||||||||||||||||||||||||||||||| | |   | ||||| |||||||||||||| ||||| || ||||||    
T  6003748 aaaaaggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcactcttattttttttaagtttccggattataaaattcgaaaaaat 6003847  T
Q  184 ccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatcc 242  Q
    |||| ||||        ||||| ||||||| |||| |||||||||| ||||| ||||||    
T  6003848 ccgtaactccatttttcaccctataacaaaggaaaccaccattccggattatgaaatcc 6003906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 93 - 186
Target Start/End: Complemental strand, 38416649 - 38416555
Alignment:
Q  93 gtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat-ttttgaagtttccggattacaaaatccggaaaaatccg 186  Q
    ||||||||||||| ||| |||||||||||||| ||| ||||||||||| ||||||| |||| | ||||||||||||||||||  | |||||||||    
T  38416649 gtgtttagggggtgttcggattatgtaatccgaaaaaatcatgtaacgtgccctatttttttatgtttccggattacaaaatttgaaaaaatccg 38416555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 41413183 - 41413252
Alignment:
Q  93 gtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatttttgaagtttccg 162  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||| ||   |||||||||||||||    
T  41413183 gtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgctcctattttttgaagtttccg 41413252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 25140723 - 25140775
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccg 71  Q
    ||||||||||||||||||||||||||||| |||||| || |||||||||||||    
T  25140723 tgttacaaacatgttcagaattggtgctgatgctgttcggattacgtaatccg 25140775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 50392529 - 50392593
Alignment:
Q  130 atcatgtaacgcgccctatttttgaag-tttccggattacaaaatccggaaaaatccgttactca 193  Q
    |||||||||||||||| ||||||  || ||||||||||||||||||||||||||||||| |||||    
T  50392529 atcatgtaacgcgccccattttttgagatttccggattacaaaatccggaaaaatccgtaactca 50392593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 31582498 - 31582560
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctat 148  Q
    ||||| |||||||||||||||| | |||||||||||| | ||||||||||||| |||||||||    
T  31582498 aaaaagggtgtttagggggtttccggattatgtaatcagaaaacatcatgtaatgcgccctat 31582560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 7817367 - 7817486
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccgga------ttgcaccatggaaaaaatggtgtttagggggttttcaga 112  Q
    ||||| |||||||||||||||||||| |||||||||||  ||||||||||| |||        ||||||| ||||||||||||||||| |||| ||||||    
T  7817367 tgttataaacatgttcagaattggtgttggtgctgtccagattacgtaatctggacatcaccagcaccat-gaaaaaatggtgtttagagggtgttcaga 7817465  T
Q  113 ttatgtaatccggaaacatca 133  Q
    || | ||||||| ||| ||||    
T  7817466 ttctttaatccgaaaaaatca 7817486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 25140514 - 25140566
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccg 71  Q
    |||||||||||||||||||||||||| || |||| | ||||||||||||||||    
T  25140514 tgttacaaacatgttcagaattggtgttgatgctattcgaattacgtaatccg 25140566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 7794211 - 7794312
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccgga------ttgcaccatggaaaaaatggtgtttagggggttttcaga 112  Q
    ||||| ||| ||||||| |||||||| ||||| |||||||||||||||||| |||        |||||||| |||||||||||||||| |||| ||||||    
T  7794211 tgttataaatatgttcaaaattggtgttggtgttgtccgaattacgtaatctggacagcaccagcaccatgaaaaaaatggtgtttagagggtgttcaga 7794310  T
Q  113 tt 114  Q
    ||    
T  7794311 tt 7794312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 42660385 - 42660435
Alignment:
Q  21 ttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccg 71  Q
    ||||||||||| |||||||||||||||||||| |||| ||||| |||||||    
T  42660385 ttacaaacatgctcagaattggtgctggtgctatccggattacataatccg 42660435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 50392453 - 50392496
Alignment:
Q  35 agaattggtgctggtgctgtccgaattacgtaatccggattgca 78  Q
    |||||||||| |||||||||| | ||||||||||||||||||||    
T  50392453 agaattggtgatggtgctgtctggattacgtaatccggattgca 50392496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 25539210 - 25539252
Alignment:
Q  260 aaaatagggcgcgcgagaaaacccacatggtgggaaaagtaat 302  Q
    |||||||||||| |||| ||||||||||| |||||||||||||    
T  25539210 aaaatagggcgcacgaggaaacccacatgctgggaaaagtaat 25539252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 42660450 - 42660498
Alignment:
Q  201 accctttaacaaaagaaaacaccattccgaattataaaatccgaaaact 249  Q
    ||||||||||||| |||||||| |||| | ||||||||||||| |||||    
T  42660450 accctttaacaaaggaaaacactattctggattataaaatccggaaact 42660498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 86 - 241
Target Start/End: Original strand, 142039 - 142194
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  142039 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatctggaaaaatc 142138  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatc 241  Q
     ||||| ||       ||||||||||||||||||||| |||||||||||||| ||||    
T  142139 tgttacaca-tttttcaccctttaacaaaagaaaacatcattccgaattatataatc 142194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 86 - 306
Target Start/End: Original strand, 3471 - 3701
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctattttt-gaagtttccggattacaaaatccggaaaaa-- 182  Q
    ||||| |||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||| || |||||      
T  3471 aaaaagggtgtttatggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttctagattacaaaattcgaaaaaaaa 3570  T
Q  183 tccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaaactaaagggtatt-------aaaatagggcgcgcga 275  Q
    | |||||||||       ||||||||||||||||||||||||||||| ||||||| || || ||||| ||||| |||       ||||||||||||||||    
T  3571 ttcgttactcattttttcaccctttaacaaaagaaaacaccattccggattataagattcggaaactcaagggcatttttggaaaaaatagggcgcgcga 3670  T
Q  276 gaaaacccacatggtgggaaaagtaattccc 306  Q
    | ||||||| | |||||||||||||| ||||    
T  3671 ggaaacccaaagggtgggaaaagtaaatccc 3701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 9573 - 9731
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| |    
T  9573 aaaaagggtgttcagggggttttcggattatgtaatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaattcggaaaaacc 9672  T
Q  185 cgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccg 243  Q
    ||| ||||        ||||| ||||||| |||||||| |||||||||||| |||||||    
T  9673 cgtaactctatttttcaccctataacaaaggaaaacacaattccgaattatgaaatccg 9731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 86 - 193
Target Start/End: Complemental strand, 23205 - 23097
Alignment:
Q  86 aaaaatggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccggaaaaatc 184  Q
    ||||| |||||||||||||||| | |||||| ||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||| ||||||||||    
T  23205 aaaaaaggtgtttagggggtttccggattatataatccggaaacatcatgtaatgcaccctattttttgaagtttccggattataaaattcggaaaaatc 23106  T
Q  185 cgttactca 193  Q
    |||||||||    
T  23105 cgttactca 23097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 205814 - 205873
Alignment:
Q  19 tgttacaaacatgttcagaattggtgctggtgctgtccgaattacgtaatccggattgca 78  Q
    |||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||    
T  205814 tgttacaaacatgttcagaattggtgctggtgatgtctggattacgtaatccggattgca 205873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 164 - 246
Target Start/End: Complemental strand, 140612 - 140530
Alignment:
Q  164 attacaaaatccggaaaaatccgttactcannnnnnnaccctttaacaaaagaaaacaccattccgaattataaaatccgaaa 246  Q
    |||||||||||||||||||||| |||||||       ||| ||||||||||||||||| ||||||| |||||| |||||||||    
T  140612 attacaaaatccggaaaaatcctttactcattttttcaccttttaacaaaagaaaacatcattccggattatataatccgaaa 140530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University