View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_51 (Length: 349)
Name: NF1519_low_51
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 14 - 333
Target Start/End: Original strand, 44847503 - 44847822
Alignment:
| Q |
14 |
tatatacataaagtaaatcatgtaattgattcattagcatcagaataaatttggactggcaaaacaaatggctcagttatcacttcttcgaaaatgcata |
113 |
Q |
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| T |
44847503 |
tatatacataaagtaaaacatgtaattgattcattagcatcagaatacatttggactggcaaaacaaatggctcagttattacttcttcgaaaatgcata |
44847602 |
T |
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| Q |
114 |
atttgaatagaagaagttagcgaaactatgatcatgatatgacgtacatccagcattgagttacaatattgaaaattttaacattaattgcatcagtaaa |
213 |
Q |
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| T |
44847603 |
atttgaatagaagaagttagcgaaactatgatcatgatatgacgtacatccagcattgagttacaatattgaaaattttaacattaattgcatcagtaaa |
44847702 |
T |
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| Q |
214 |
ttttagttacttaacataaataagtccccttcgtatacattaactcactttttattnnnnnnnnntatactagtccttctttatctgaatcttggaagat |
313 |
Q |
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| T |
44847703 |
ttttagttacttaacataaataagtccccttcgtatacattaactcactttttattaaaaaaaaatatactagtctttctttatctgaatcttggaagat |
44847802 |
T |
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| Q |
314 |
gatagtgactgatacctagg |
333 |
Q |
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| T |
44847803 |
gatagtgactgatacctagg |
44847822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 56 - 232
Target Start/End: Original strand, 44861167 - 44861338
Alignment:
| Q |
56 |
gaataaatttggactggcaaaacaaatggctcagttatcacttcttcgaaaatgcataatttgaatagaagaagttagcgaaactatgatcatgatatga |
155 |
Q |
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| T |
44861167 |
gaatagatttggactggcaaaaaaacttcttcagttattacaacttccaaaatgcataatttgaatggaagaaattagtgaaaccatgatcatgat---- |
44861262 |
T |
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| Q |
156 |
cgtacatccagcattgagttacaatattgaaaattttaacattaattgcatcagtaaattttagttacttaacataa |
232 |
Q |
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| T |
44861263 |
-gtagatgcagcattgagttactatattgcaaattttaacactaattgcatcactaaattttacttacctaacataa |
44861338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 203
Target Start/End: Original strand, 44871705 - 44871881
Alignment:
| Q |
32 |
catgtaattgattcattagcatcagaataaatttggactggcaaaacaaatggctcagttatcactt-----cttcgaaaatgcataatttgaatagaag |
126 |
Q |
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| T |
44871705 |
catgtacttgattcattagcataggaatagattttgactggcaaaaaaacttgctcacttattacaatacaactttcaaaatgcataatttgaatggaaa |
44871804 |
T |
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| Q |
127 |
aagttagcgaaactatgatcatgatatgacgtacatccagcattgagttacaatattgaaaattttaacattaattg |
203 |
Q |
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| T |
44871805 |
aagttagtggaactatgatcatggtatgatgtacatacaacattgacttactatattacaaattttaatactaattg |
44871881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 44896540 - 44896601
Alignment:
| Q |
167 |
cattgagttacaatattgaaaattttaacattaattgcatcagtaaattttagttacttaac |
228 |
Q |
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| T |
44896540 |
cattgacttactatattgcaaaattcaacactaattgcatcagtaaattttaattacataac |
44896601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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