View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_53 (Length: 340)
Name: NF1519_low_53
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 6 - 325
Target Start/End: Original strand, 29207478 - 29207801
Alignment:
| Q |
6 |
gtccaagaatatatatcatgtctaaccaacttaaaagaaatat----ttgagtgcaaaattaagtgtggatgcctataacaactatctaaagtatgacat |
101 |
Q |
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| T |
29207478 |
gtccaataatatatatcaggtctaaccaacttaaaagaaatatatatttgagtgcaaaattaagcgtggatgcctataacaactatctaaagtatgacat |
29207577 |
T |
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| Q |
102 |
atcaagaccacctttttcaaaattatttgaaaataggaatttgtctttctatatatagaagcaaatcaacacttaccaaatagtggttcaatatatctat |
201 |
Q |
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| T |
29207578 |
atcaagaccacctttttcaaaattatttataaataggaatttgtctttctatatatagaagcaaatcaacacttaccaaatagtggttcaatatatctat |
29207677 |
T |
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| Q |
202 |
catttgtagcataatacttttaacaaagtttaaagagatatgtgtagtttaggcaattgtgatttaaagaaacgatgacaagtagaaagttgcatggata |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29207678 |
catttgtagcataatacttttaacaaagtttaaagagatatgtgtagtttaggcaattgtgatttaaagaaatgatgacaagtagaaagttgcatggata |
29207777 |
T |
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| Q |
302 |
aactttgttaggttagttgtactt |
325 |
Q |
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|||||||||||||||||||||||| |
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| T |
29207778 |
aactttgttaggttagttgtactt |
29207801 |
T |
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