View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1519_low_55 (Length: 335)
Name: NF1519_low_55
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_55 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 20 - 313
Target Start/End: Complemental strand, 35036653 - 35036360
Alignment:
| Q |
20 |
tttgggtgggagtaaactaacataccagacaagtggctttgattgtggtgtcagcatcacgaccatctatatcttgatcatcaacggttgaaaggagcac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35036653 |
tttgggtgggagtaaactaacataccagacaagttgctttgattgtggtgtcagcatcacgaccatctatatcttgatcatcaacggttgaaaggagcac |
35036554 |
T |
|
| Q |
120 |
atccatgaagtcaagtttggtgccggcaggtttcttgttgcgtttgtgttgatcgagccaaacttgaacaaaatcatctaactctttagccgttttcttc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35036553 |
atccatgaagtcaagtttggtgccggcaggtttcttgttgcgtttgtgttgatcgagccaaacttgaacaaaatcatctaactctttagccgttttcttc |
35036454 |
T |
|
| Q |
220 |
atctgcttctgttttccatccaaatccaaccatctcaaaaaccgcaacatgtcagatataacaaatgaaccgctgagatcgaaaaagtccctaa |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35036453 |
atctgcttctgttttccatccaaatccaaccatctaaaaaaccgcaacatgtcagatataacaaatgaaccgctgagatcgaaaaagtccctaa |
35036360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 39 - 315
Target Start/End: Complemental strand, 35020429 - 35020159
Alignment:
| Q |
39 |
acataccagacaagtggctttgattgtggtgtcagcatcacgaccatctatatcttgatcatcaacggttgaaaggagcacatccatgaagtcaagtttg |
138 |
Q |
| |
|
|||||||| |||||||||||||||||| || ||||||||||| ||||||| ||||| |||||||||||||||| |||||||||||||| || ||| |
|
|
| T |
35020429 |
acataccatacaagtggctttgattgtagtatcagcatcacggccatctaaatctt---catcaacggttgaaagcagcacatccatgaaatc----ttg |
35020337 |
T |
|
| Q |
139 |
gtgccggc-aggtttcttgttgcgtttgtgttgatcgagccaaacttgaacaaaatcatctaactctttagccgttttcttcatctgcttctgttttcca |
237 |
Q |
| |
|
| || | || ||||| || ||||||| ||||| |||||||| |||||| |||||||||||||| || ||||||||||| ||||||||||||||| |
|
|
| T |
35020336 |
ttcacgaccagaattcttcttatgtttgtgctgatcaagccaaacacaaacaaagtcatctaactcttttgctgttttcttcatttgcttctgttttcca |
35020237 |
T |
|
| Q |
238 |
tccaaatccaaccatctcaaaaaccgcaacatgtcagatataacaaatgaaccgctgagatcgaaaaagtccctaatc |
315 |
Q |
| |
|
||||||||||||||||||||| || | ||||||||||| | |||||||||||| || |||| ||||| || |||||| |
|
|
| T |
35020236 |
tccaaatccaaccatctcaaatacggtaacatgtcagaaacaacaaatgaaccactaagattaaaaaaatctctaatc |
35020159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 160 - 290
Target Start/End: Complemental strand, 35044644 - 35044514
Alignment:
| Q |
160 |
cgtttgtgttgatcgagccaaacttgaacaaaatcatctaactctttagccgttttcttcatctgcttctgttttccatccaaatccaaccatctcaaaa |
259 |
Q |
| |
|
|||||||||||||| | |||| |||||||||| ||||| ||||||||||| ||||||||||| | ||||| |||||||||||||||||||||||| |||| |
|
|
| T |
35044644 |
cgtttgtgttgatcaatccaaccttgaacaaactcatccaactctttagcagttttcttcatttccttctcttttccatccaaatccaaccatcttaaaa |
35044545 |
T |
|
| Q |
260 |
accgcaacatgtcagatataacaaatgaacc |
290 |
Q |
| |
|
|| ||||| |||||||||||||| ||||| |
|
|
| T |
35044544 |
acggcaacgaatcagatataacaaaggaacc |
35044514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 35044762 - 35044697
Alignment:
| Q |
39 |
acataccagacaagtggctttgattgtggtgtcagcatcacgaccatctatatcttgatcatcaac |
104 |
Q |
| |
|
|||||||||||| || | |||||| || || |||||||||||||||| || |||||||||||||| |
|
|
| T |
35044762 |
acataccagacacgtagttttgatagtagttccagcatcacgaccatcaatttcttgatcatcaac |
35044697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University