View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_56 (Length: 333)
Name: NF1519_low_56
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 75 - 322
Target Start/End: Complemental strand, 37533676 - 37533429
Alignment:
| Q |
75 |
ctaagatatgatcatttctttcatttttctctcttataactctaaccctatcttaatctatttctcttcatnnnnnnnnnnnnnnnnnnnnnntcttaga |
174 |
Q |
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| T |
37533676 |
ctaagatatgatcatttctttcatttttttctcttataactctaaccctatcttaatctatttctcttcattaaaaaataataaaaatataattcttaga |
37533577 |
T |
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| Q |
175 |
tagtaagattaagacaagagagtaagattctatttttaatttttaatgaagagaaagagagtaggattaagagagggaaattgctatgtaaaacgaaata |
274 |
Q |
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| T |
37533576 |
tagtaagattaagacaagagagtaagattctatttttaatttttaatgaagagaaagagagtaggattaagagagggaaattgctatgtaaaacgaaata |
37533477 |
T |
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| Q |
275 |
tatactcccgaaatcatcccgatgagtgtatatcaccattcctccttt |
322 |
Q |
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| T |
37533476 |
tatactcccgaaatcatcccgatgagtgtatatcaccattcctccttt |
37533429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 37534084 - 37534023
Alignment:
| Q |
18 |
atgaaatcctacactaatattgtatgcatgattcgtaagactcatcttattagtaaactaag |
79 |
Q |
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| T |
37534084 |
atgaaatcctacactaatattgtatgcatgattcgtaagactcatcttatttgtaaactaag |
37534023 |
T |
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