View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1519_low_58 (Length: 326)

Name: NF1519_low_58
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1519_low_58
NF1519_low_58
[»] chr3 (1 HSPs)
chr3 (11-310)||(37315975-37316274)
[»] chr5 (1 HSPs)
chr5 (138-310)||(19207016-19207188)
[»] chr7 (3 HSPs)
chr7 (213-310)||(38883811-38883908)
chr7 (173-310)||(38893003-38893140)
chr7 (60-154)||(38883967-38884061)
[»] chr1 (6 HSPs)
chr1 (45-91)||(16175294-16175340)
chr1 (45-115)||(33115133-33115203)
chr1 (209-298)||(30620974-30621063)
chr1 (210-286)||(9700035-9700111)
chr1 (210-256)||(16223247-16223293)
chr1 (210-253)||(16183860-16183903)


Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 37315975 - 37316274
Alignment:
Q  11 cataggggcaagagttagaccataaacnnnnnnncttcccattttgtccccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaaca 110  Q
    |||| ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37315975 cataagggcaagagttagaccataaactttttttcttcccattttgtccccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaaca 37316074  T
Q  111 ccatttactgctgctgatacatttggaggcaaagttccaggcttgagtgcacctgggtgtgtgtaatatattcttccaagtaacttggtaacatttggta 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316075 ccatttactgctgctgatacatttggaggcaaagttccaggcttgagtgcacctgggtgtgtgtaatatattcttccaagtaacttggtaacatttggta 37316174  T
Q  211 tgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatcaagggcagttag 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316175 tgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatcaagggcagttag 37316274  T

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Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 138 - 310
Target Start/End: Complemental strand, 19207188 - 19207016
Alignment:
Q  138 ggcaaagttccaggcttgagtgcacctgggtgtgtgtaatatattcttccaagtaacttggtaacatttggtatgcagaaaaggtcatatgcatctgtga 237  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  19207188 ggcaaagttccaggcttgagtgcatctgggtgtgtgtagtatattcttccaagtaacttggtaacatttggtatgcagaaaaggtcatatgcatctgtgc 19207089  T
Q  238 agaatcccataccagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatcaagggcagttag 310  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| | ||||||    
T  19207088 agaatcccataccagcaattatgatggctgtgaaaaggtaccattgtgttttggctgcatgaagagaagttag 19207016  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 213 - 310
Target Start/End: Complemental strand, 38883908 - 38883811
Alignment:
Q  213 cagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatcaagggcagttag 310  Q
    ||||| || ||||| |||||||| ||||||||||||||||| || ||||| || ||||||||||||||||||||||| ||  ||||||| ||| ||||    
T  38883908 cagaacagatcataggcatctgtaaagaatcccataccagctatgatgattgcagtgaaatggtaccattgtgttttagccacatcaagcgcatttag 38883811  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 173 - 310
Target Start/End: Complemental strand, 38893140 - 38893003
Alignment:
Q  173 gtaatatattcttccaagtaacttggtaacatttggtatgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaa 272  Q
    ||||||||| | ||| || ||||||||||||   | ||||||||| || ||||| ||||| || ||||||||||| |||||||| ||||| ||||||||     
T  38893140 gtaatatatgcgtcccagcaacttggtaacaagggatatgcagaacagatcataggcatcagtaaagaatcccattccagcaatgatgattgctgtgaag 38893041  T
Q  273 tggtaccattgtgttttggctgcatcaagggcagttag 310  Q
    || |||||||| ||||| ||  ||||||| ||| ||||    
T  38893040 tgataccattgcgttttcgccacatcaagtgcatttag 38893003  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 154
Target Start/End: Complemental strand, 38884061 - 38883967
Alignment:
Q  60 ccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaacaccatttactgctgctgatacatttggaggcaaagttccaggctt 154  Q
    |||||||| |||||||||||||| ||||  || || ||||||| ||| |||||||| || || ||||||||||| |||||||| || || |||||    
T  38884061 ccaagccagccaaagaaaagttgccctgaaagtgttccacagaaagctacaccattcacagcagctgatacattgggaggcaatgtaccgggctt 38883967  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 16175294 - 16175340
Alignment:
Q  45 cttcccattttgtccccaagccaaccaaagaaaagttggcctgctag 91  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||    
T  16175294 cttcccattttgtccccaagccaaccaaagaataattggcctgctag 16175340  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 33115203 - 33115133
Alignment:
Q  45 cttcccattttgtccccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaacaccatt 115  Q
    |||||||||||||| ||||||||||||||||||||||| ||||| || |  |||| || ||||||||||||    
T  33115203 cttcccattttgtcaccaagccaaccaaagaaaagttgtcctgccagtgctccactgaaagcaacaccatt 33115133  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 298
Target Start/End: Original strand, 30620974 - 30621063
Alignment:
Q  209 tatgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatc 298  Q
    ||||||||| || || |||||||| |||||||| ||||| ||||| || |  || |||||||||||||||||||||||||| ||| ||||    
T  30620974 tatgcagaatagatcgtatgcatcggtgaagaagcccattccagctatgacaattgctgtgaaatggtaccattgtgttttcgctacatc 30621063  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 286
Target Start/End: Original strand, 9700035 - 9700111
Alignment:
Q  210 atgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgt 286  Q
    |||||||| || ||||| ||||| |||||||||||||| ||||||||||  || ||||| | |||||||||||||||    
T  9700035 atgcagaacagatcataggcatcagtgaagaatcccatgccagcaattactatagctgttacatggtaccattgtgt 9700111  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 16223293 - 16223247
Alignment:
Q  210 atgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaat 256  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  16223293 atgcagaaaagatcatatgcatcagtgaagaatcccattccagcaat 16223247  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 16183903 - 16183860
Alignment:
Q  210 atgcagaaaaggtcatatgcatctgtgaagaatcccataccagc 253  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||    
T  16183903 atgcagaaaagatcatatgcatcagtgaagaatcccattccagc 16183860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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