View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1519_low_59 (Length: 325)
Name: NF1519_low_59
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_59 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 311
Target Start/End: Original strand, 21006534 - 21006824
Alignment:
| Q |
20 |
gtttaaattaatttctcaaacatgatctacatggtaaaataagattgaaagcannnnnnnnnnnnnnnnnccatatacttttatgacatagctttaaact |
119 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
21006534 |
gtttaaattactttctcaaacatgatctacatggtaaaataagatcgaaagcatttgtatttttttttt-ccatgtacttttatgacatagctttaaact |
21006632 |
T |
|
| Q |
120 |
ctttaattctacataagaataatgacagagaattgtggattaacataactatgaattcaaattcattttacattttcaatggttacaaatagagtaaaac |
219 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21006633 |
cttaaattctacataagaataatgacagagaattgtggattaacataactatgaattcaaattcattttacattttcaatggttacaaatagagtaaaac |
21006732 |
T |
|
| Q |
220 |
atatcaaatcataattatggttaatcactctttattccatataaattacattacatatattgtataaacttctcttcctgttgcccttcaca |
311 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21006733 |
atatcaacacataattatggttaatcactctttattccatataaattacattacatatattgtataaacttctcttcctgttgcccttcaca |
21006824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University