View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_60 (Length: 324)
Name: NF1519_low_60
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_60 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 9 - 324
Target Start/End: Original strand, 14555011 - 14555326
Alignment:
| Q |
9 |
attatactaattgacgataacattaattcattagtatccatacaaacatttggtgtataattaagtggtgcataattaggataggtagggtcaaccaatc |
108 |
Q |
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| T |
14555011 |
attatactaattgacgataacattaattcattagtatccatacaaacatttggtgtataattaagtggtgcataattaggataggtagggtcaaccaatc |
14555110 |
T |
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| Q |
109 |
attgattcatctaagtggtaaaggacattaaccttgtggttagagatttgatttttgtctcatatgtatcgaaattttttggcccgccttatatacctta |
208 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14555111 |
attgattcatctaagtggtaaaggacattaacctcgtggttagagattcgatttttgtctcatatgtatcgaaattttttggcccgccttatatacctta |
14555210 |
T |
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| Q |
209 |
caggttctccgacaaagattagtcactattaaacagtagttaaaacttcatatcagtatcatcgtaaccccaacaacaaagatgaatagggatcgaagaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
14555211 |
caggttctccgacaaagattagtcactattaaacagtagttaaaacttcatatcagtatcatcgtaacccaaacaaaaaagatgaatagggatcgaagaa |
14555310 |
T |
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| Q |
309 |
aatgaaaacacgcatt |
324 |
Q |
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| T |
14555311 |
aatgaaaacacgcatt |
14555326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 37535074 - 37535172
Alignment:
| Q |
13 |
tactaattgacgataacattaattcattagtatccatacaaacatttggtgtataattaagtggtgcataattaggataggtagggtcaaccaatcatt |
111 |
Q |
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| T |
37535074 |
tactaattgacgataacattcattcattagtatccatacaaacatttggtgtataattaagtggtgcataattaagatatgtagggtcaaccaaacatt |
37535172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 37596346 - 37596427
Alignment:
| Q |
30 |
attaattcattagtatccatacaaacatttggtgtataattaagtggtgcataattaggataggtagggtcaaccaatcatt |
111 |
Q |
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| T |
37596346 |
attaattcattagtatccatacaaacatttggtgtataattaagtggtgcataattaagatatgtagggtcaaccaaacatt |
37596427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 37391157 - 37391092
Alignment:
| Q |
9 |
attatactaattgacgataacattaattcattagtatccatacaaaca-tttggtgtataattaag |
73 |
Q |
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| T |
37391157 |
attatactaattgacgataacattaattcgttagtattcatcgaaacattttagtgtataattaag |
37391092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 37713617 - 37713652
Alignment:
| Q |
30 |
attaattcattagtatccatacaaacatttggtgta |
65 |
Q |
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| T |
37713617 |
attaattcattagtatccatacaaacatttggtgta |
37713652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 37825837 - 37825874
Alignment:
| Q |
9 |
attatactaattgacgataacattaattcattagtatc |
46 |
Q |
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| T |
37825837 |
attatactaattgacgataacattcatttattagtatc |
37825874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 37713566 - 37713602
Alignment:
| Q |
10 |
ttatactaattgacgataacattaattcattagtatc |
46 |
Q |
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| T |
37713566 |
ttatactaattgacgataacattcatttattagtatc |
37713602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 19478546 - 19478584
Alignment:
| Q |
205 |
cttacaggttctccgacaaagattagtcactattaaaca |
243 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |
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| T |
19478546 |
cttacaggttctccgacaaagattagtcaccgttaaaca |
19478584 |
T |
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