View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1519_low_61 (Length: 324)
Name: NF1519_low_61
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_61 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 313
Target Start/End: Original strand, 41350803 - 41351101
Alignment:
| Q |
15 |
catattctattagatagtggagctcttgtttgtgcttcaaccggtagatacgggtattgatctctcaatattctatggttagtgacttgattcttatgca |
114 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41350803 |
catattctattagatagcggagctcttgtttgtgcttcgaccggtagatacgggtattgatctctcaatattctatggttagtgacttgattcttatgca |
41350902 |
T |
|
| Q |
115 |
ttctatttgttttgtggactaatgaattgctatttgcagctaccctggaagtactccacttcatctagctgctagaggggggtctcttgattgcattcgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41350903 |
ttctatttgttttgtggactaatgaattgctatttgcagctatcctggaagtactccacttcatctagctgctagaggggggtctcttgattgcattcgt |
41351002 |
T |
|
| Q |
215 |
gaattgttggcatggggcgcagatcgtattcagcgtgattcatctgggtatggtttggttttggatttgttaacatatctaaccatatttcatcttcat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41351003 |
gaattgttggcatggggcgcagatcgtattcagcgtgattcatctgggtatggtttggttttggatttgttaacatatctaaccatttttcatcttcat |
41351101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 264
Target Start/End: Original strand, 23713237 - 23713337
Alignment:
| Q |
164 |
agtactccacttcatctagctgctagaggggggtctcttgattgcattcgtgaattgttggcatggggcgcagatcgtattcagcgtgattcatctgggt |
263 |
Q |
| |
|
|||||||||||||||||||| |||| ||| || ||||| |||||||| || ||||| || |||||||| ||||||||| | || |||||| ||||||||| |
|
|
| T |
23713237 |
agtactccacttcatctagcagctaaaggaggatctctcgattgcatccgcgaattattagcatggggtgcagatcgtctccaacgtgatgcatctgggt |
23713336 |
T |
|
| Q |
264 |
a |
264 |
Q |
| |
|
| |
|
|
| T |
23713337 |
a |
23713337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 23713088 - 23713141
Alignment:
| Q |
29 |
tagtggagctcttgtttgtgcttcaaccggtagatacgggtattgatctctcaa |
82 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||| |||||||||||| |||| |
|
|
| T |
23713088 |
tagtggagctcttgtttgtgcttcaactagcagatatgggtattgatctttcaa |
23713141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 70
Target Start/End: Complemental strand, 7346874 - 7346840
Alignment:
| Q |
36 |
gctcttgtttgtgcttcaaccggtagatacgggta |
70 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
7346874 |
gctcttgtttgtgcttcaaccggtggatacgggta |
7346840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University