View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1519_low_62 (Length: 323)
Name: NF1519_low_62
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_62 |
 | |
|
| [»] scaffold0891 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0891 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 28 - 307
Target Start/End: Complemental strand, 523 - 244
Alignment:
| Q |
28 |
caactttatttcgggcactttctgagttgtctaacatttatcgttcaagtgtctgacaccacgacacacctagttcctaaagtctccgtgcttcatatat |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||| |
|
|
| T |
523 |
caactttatttcgggcactttctgagttgtctaacatgtatcgttcaagtgtctgacaccacgacacacctagtccctgaagtg-ccgtgcttcatatat |
425 |
T |
|
| Q |
128 |
gcagaaaacaattaca-aaggagatatactactcgtttaacttacctttgaagggaataattcccctgttaacaagctcatcgtattgtaaatatcccaa |
226 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
424 |
gcagaaaacaattacagaaggagatatactactcgtttaacttacctttgaagggaataattcccctgttaacaagctcatcgtattgtaaatatcccaa |
325 |
T |
|
| Q |
227 |
caagccagaagccgaagcagtccaaaacactagttcttgaatccccaaatcttttgctactcttccagcaaagctcgaaat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
324 |
caagccagaagccgaagcagtccaaaacactagctcttgaatccccaaatcttttgctactcttccagcaaagctcgaaat |
244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 164 - 306
Target Start/End: Original strand, 35775909 - 35776051
Alignment:
| Q |
164 |
taacttacctttgaagggaataattcccctgttaacaagctcatcgtattgtaaatatcccaacaagccagaagccgaagcagtccaaaacactagttct |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| |||| |||| |||||||||||||||||||||||| |
|
|
| T |
35775909 |
taacttacctttgaagggaataattcccctctcaacaagctcatcgtactgtaaatatcccaacatgccacaagcagaagcagtccaaaacactagttct |
35776008 |
T |
|
| Q |
264 |
tgaatccccaaatcttttgctactcttccagcaaagctcgaaa |
306 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||||||||| ||||| |
|
|
| T |
35776009 |
tgaatccccaaatcctttgccacttttccagcaaagcccgaaa |
35776051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 298
Target Start/End: Original strand, 35854229 - 35854358
Alignment:
| Q |
169 |
tacctttgaagggaataattcccctgttaacaagctcatcgtattgtaaatatcccaacaagccagaagccgaagcagtccaaaacactagttcttgaat |
268 |
Q |
| |
|
|||||||||| |||| |||||| || |||||||||||||| ||||| |||||||| | |||||| |||| ||||||||||||||| ||| |||| ||| |
|
|
| T |
35854229 |
tacctttgaatggaagaattcctcttttaacaagctcatcatattgcaaatatccgacaaagccacaagcagaagcagtccaaaactgtagctctttaat |
35854328 |
T |
|
| Q |
269 |
ccccaaatcttttgctactcttccagcaaa |
298 |
Q |
| |
|
|| ||||| || || |||||||||||||| |
|
|
| T |
35854329 |
gcctaaatccttagccactcttccagcaaa |
35854358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 298
Target Start/End: Original strand, 35759489 - 35759618
Alignment:
| Q |
169 |
tacctttgaagggaataattcccctgttaacaagctcatcgtattgtaaatatcccaacaagccagaagccgaagcagtccaaaacactagttcttgaat |
268 |
Q |
| |
|
|||||| ||| |||| ||| || || || ||||| ||||| || || |||||||||| || ||| |||| ||||||||||||||| || ||||||||| |
|
|
| T |
35759489 |
taccttggaatggaagaatgcctcttttgacaagttcatcataatgcaaatatcccacaaacccacaagcagaagcagtccaaaactgtatttcttgaat |
35759588 |
T |
|
| Q |
269 |
ccccaaatcttttgctactcttccagcaaa |
298 |
Q |
| |
|
||||||||| ||||||||||||||||||| |
|
|
| T |
35759589 |
gcccaaatctcttgctactcttccagcaaa |
35759618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University