View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_64 (Length: 321)
Name: NF1519_low_64
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_64 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 43864291 - 43864005
Alignment:
| Q |
17 |
tcactgtcaccgttgcttcctccccgacaaccgcccaagaaatcctccnnnnnnncgaccaatccttcgccaaccgccctatccctgaatcagttgctgc |
116 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43864291 |
tcaccgtcaccgttgcttcctccccgaaaaccgcccaagaaatcctccaaaaaaacgaccaatccttcgccaaccgccctatccctgaatcagttgctgc |
43864192 |
T |
|
| Q |
117 |
tcaacccaacgtcaacgacacactcgcatggtcccatgccgactcacggtggcgcaaccgtagacgtatctgcaccacacaaatattcaccacccaccgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43864191 |
tcaacccaacgtcaacgacacactcgcatggtcccatgccgactcacggtggcgtaaccgtagacgtatctgcaccacacaaatattcaccacccaccgc |
43864092 |
T |
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| Q |
217 |
cttgaccttctccaacatctccgtcaccggaaagttgagcaactagtccaacaccttcacaaaaaagcagtagagaaaacaaccgtt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43864091 |
cttgaccttctccaacatctccgtcaccggaaagttgagcaactagtccaacaccttcacaaaaaagcagcagagaaaacaaccgtt |
43864005 |
T |
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