View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1519_low_65 (Length: 320)

Name: NF1519_low_65
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1519_low_65
NF1519_low_65
[»] chr2 (1 HSPs)
chr2 (181-296)||(14360783-14360902)
[»] chr5 (3 HSPs)
chr5 (127-184)||(17591229-17591286)
chr5 (17-56)||(39136585-39136624)
chr5 (95-132)||(36912920-36912957)
[»] chr4 (1 HSPs)
chr4 (127-184)||(19130239-19130296)
[»] chr7 (2 HSPs)
chr7 (127-184)||(14735503-14735560)
chr7 (95-132)||(14735440-14735477)
[»] chr3 (1 HSPs)
chr3 (30-64)||(52671207-52671241)


Alignment Details
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 181 - 296
Target Start/End: Complemental strand, 14360902 - 14360783
Alignment:
Q  181 atcaactttgtctctctcattgcaagcaccctctttcagacttcaaatcctttctctttcaatgggtttga----aagcttaatattaataatcacaggg 276  Q
    ||||||||| |||||||  |||||||  ||||||||||||||||| ||| |||||||||||||||||||||    |||||||||| ||||||||| || |    
T  14360902 atcaactttatctctcttgttgcaaggtccctctttcagacttcatatcttttctctttcaatgggtttgaaattaagcttaatactaataatcagagag 14360803  T
Q  277 ctttgaagtaagaacataaa 296  Q
     |||||||||||||||||||    
T  14360802 ttttgaagtaagaacataaa 14360783  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 17591286 - 17591229
Alignment:
Q  127 tcttccacccactatcacctttctctctcctccatgccatccaccaccagcaacatca 184  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||    
T  17591286 tcttccacccactatcacccttctctctcatccatgccacccaccaccagcaacatca 17591229  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 39136585 - 39136624
Alignment:
Q  17 agatttaatgagtaacattatgtaaagcataataatggta 56  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39136585 agatttaatgagtaacattatgtaaagcataataatggta 39136624  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 36912957 - 36912920
Alignment:
Q  95 tcttatgatagtctcttcacatttgaattttttcttcc 132  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  36912957 tcttatgatagtctcttcacacttgatttttttcttcc 36912920  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 19130296 - 19130239
Alignment:
Q  127 tcttccacccactatcacctttctctctcctccatgccatccaccaccagcaacatca 184  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||    
T  19130296 tcttccacccactatcacccttctctctcctccatgccacccaccacctgcaacatca 19130239  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 14735503 - 14735560
Alignment:
Q  127 tcttccacccactatcacctttctctctcctccatgccatccaccaccagcaacatca 184  Q
    ||||||||||||||||| | ||||||||| ||||||||| |||| |||||||||||||    
T  14735503 tcttccacccactatcatccttctctctcatccatgccacccactaccagcaacatca 14735560  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 14735440 - 14735477
Alignment:
Q  95 tcttatgatagtctcttcacatttgaattttttcttcc 132  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  14735440 tcttatgatagtctcttcacacttgatttttttcttcc 14735477  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 52671207 - 52671241
Alignment:
Q  30 aacattatgtaaagcataataatggtaataatatg 64  Q
    |||||||||||||||||||||||||||||||||||    
T  52671207 aacattatgtaaagcataataatggtaataatatg 52671241  T

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