View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1519_low_66 (Length: 318)

Name: NF1519_low_66
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1519_low_66
NF1519_low_66
[»] chr2 (9 HSPs)
chr2 (13-197)||(824782-824966)
chr2 (46-223)||(989773-989950)
chr2 (243-304)||(824717-824782)
chr2 (127-223)||(1012172-1012268)
chr2 (10-100)||(410248-410341)
chr2 (10-95)||(821147-821235)
chr2 (137-220)||(1043976-1044059)
chr2 (44-95)||(965481-965532)
chr2 (18-159)||(1024900-1025040)
[»] scaffold0244 (1 HSPs)
scaffold0244 (100-197)||(6036-6133)
[»] chr6 (1 HSPs)
chr6 (44-100)||(10116763-10116819)
[»] chr4 (1 HSPs)
chr4 (183-281)||(40640740-40640839)
[»] chr7 (1 HSPs)
chr7 (134-203)||(32246796-32246865)
[»] chr5 (1 HSPs)
chr5 (18-95)||(36199114-36199190)


Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 824966 - 824782
Alignment:
Q  13 aaaatataaaccaaatacgattcttaaacttaaacaaacccgataaagttcaagattctgaagcttagggaagtggtggagcagttgtgctaccaaatcc 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  824966 aaaagataaaccaaatacgattcttaaacttaaacaaacccgataaagttcaagattctgaagcttagggaagtggtggagcagttgtgctaccaaatcc 824867  T
Q  113 aatacatagtggagctccaggtgggtcaaattatgaaaggtaggaatgtcatcataagggcgctgtggttgattcacctaaatta 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  824866 aatacatagtggagctccaggtgggtcaaattatgaaaggtaggaatgtcatcataagggcgttgtggttgattcacctaaatta 824782  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 223
Target Start/End: Original strand, 989773 - 989950
Alignment:
Q  46 acaaacccgataaagttcaagattctgaagcttagggaagtggtggagcagttgtgctaccaaatccaatacatagtggagctccaggtgggtcaaatta 145  Q
    ||||||| |||||||||  ||||| |||||||||||| |||||||||||| |||| ||||||||||| |   || || |||||||| |||||||||||||    
T  989773 acaaacctgataaagttggagattttgaagcttagggcagtggtggagcacttgtactaccaaatcccaattattgtagagctccaagtgggtcaaatta 989872  T
Q  146 tgaaaggtaggaatgtcatcataagggcgctgtggttgattcacctaaattatgtagaaagacacaccatcaaatcag 223  Q
    |||||  | ||||||||| || ||||||||||  | | |||  ||||||||||||| |||||||||| ||||||||||    
T  989873 tgaaacatgggaatgtcaacacaagggcgctgcagcttatttgcctaaattatgtacaaagacacactatcaaatcag 989950  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 243 - 304
Target Start/End: Complemental strand, 824782 - 824717
Alignment:
Q  243 acgcagataaatcacatttt----tgctttgttttccatcccattcaatcagtgtattatgcattt 304  Q
    ||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||    
T  824782 acgcagataaatcacattttaatttgctttgttttccatcccattcaatcagtgtattatgcattt 824717  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 1012172 - 1012268
Alignment:
Q  127 ctccaggtgggtcaaattatgaaaggtaggaatgtcatcataagggcgctgtggttgattcacctaaattatgtagaaagacacaccatcaaatcag 223  Q
    ||||| ||||||||||||||||||| ||  |||||||||||||||| ||||| |  ||||||||||||| ||||| |||||||||| ||||| ||||    
T  1012172 ctccaagtgggtcaaattatgaaagatataaatgtcatcataagggagctgtagccgattcacctaaataatgtaaaaagacacactatcaattcag 1012268  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 410341 - 410248
Alignment:
Q  10 aagaaaatataaaccaaatacgattcttaaacttaa---acaaacccgataaagttcaagattctgaagcttagggaagtggtggagcagttgt 100  Q
    ||||||| ||||| |||||| |||||||||| ||||   |||||||||||||||||||||||| |||||||||||| | |||||||||| ||||    
T  410341 aagaaaagataaatcaaatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggcaatggtggagcacttgt 410248  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 821235 - 821147
Alignment:
Q  10 aagaaaatataaaccaaatacgattcttaaacttaaa---caaacccgataaagttcaagattctgaagcttagggaagtggtggagca 95  Q
    ||||||| ||||| |||||| |||||||||||||||    |||||| |||||||||||||||| |||||||||||| | ||||||||||    
T  821235 aagaaaagataaatcaaataggattcttaaacttaacaagcaaacctgataaagttcaagattttgaagcttagggcaatggtggagca 821147  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 220
Target Start/End: Complemental strand, 1044059 - 1043976
Alignment:
Q  137 gtcaaattatgaaaggtaggaatgtcatcataagggcgctgtggttgattcacctaaattatgtagaaagacacaccatcaaat 220  Q
    ||||||||| ||||| ||  ||||||||||||||| |||||    ||||||||||||||||||||||||||  ||| |||||||    
T  1044059 gtcaaattacgaaagatataaatgtcatcataaggacgctgcaactgattcacctaaattatgtagaaagatgcactatcaaat 1043976  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 965481 - 965532
Alignment:
Q  44 aaacaaacccgataaagttcaagattctgaagcttagggaagtggtggagca 95  Q
    ||||||||| |||||||||||||||| |||||||||||| | || |||||||    
T  965481 aaacaaacctgataaagttcaagattttgaagcttagggcaatgatggagca 965532  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 1024900 - 1025040
Alignment:
Q  18 ataaaccaaatacgattcttaaacttaaacaaacccgataaagttcaagattctgaagcttagggaagtggtggagcagttgtgctaccaaatccaatac 117  Q
    |||||||||||| ||||||||||||| ||||||||   |||| ||  ||||| |||||||||||| ||||||| || | ||||  || ||||| | |       
T  1024900 ataaaccaaatatgattcttaaactt-aacaaacctcgtaaattttgagattttgaagcttagggcagtggtgaagaacttgtaatatcaaatgccaact 1024998  T
Q  118 atagtggagctccaggtgggtcaaattatgaaaggtaggaat 159  Q
     | ||||||||||| ||  ||||||||||||||| |||||||    
T  1024999 gttgtggagctccaagtatgtcaaattatgaaagataggaat 1025040  T

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Target: scaffold0244 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 6036 - 6133
Alignment:
Q  100 tgctaccaaatccaatacatagtggagctccaggtgggtcaaattatgaaaggtaggaatgtcatcataagggcgctgtggttgattcacctaaatta 197  Q
    ||||||||||||| |   || |||||| |||| ||||||||||||||||||| ||| ||| ||| ||||||  |  ||||| ||||||||||||||||    
T  6036 tgctaccaaatcccaactattgtggagttccaagtgggtcaaattatgaaagatagaaatatcaccataagatccttgtggctgattcacctaaatta 6133  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 10116763 - 10116819
Alignment:
Q  44 aaacaaacccgataaagttcaagattctgaagcttagggaagtggtggagcagttgt 100  Q
    ||||||||| |||||||||||||||| ||||| |||||| | |||||||||| ||||    
T  10116763 aaacaaacctgataaagttcaagattttgaaggttagggcaatggtggagcacttgt 10116819  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 281
Target Start/End: Complemental strand, 40640839 - 40640740
Alignment:
Q  183 gattcacctaaattatgtagaaagacacaccatcaaatcagagcaaa-ttcccaaaataaaacgcagataaatcacatttttgctttgttttccatccca 281  Q
    ||||||| |||||||| ||||| | |||||||||||||||| | ||| ||| ||||| |||| ||| || ||| |||||| | || ||||||||||||||    
T  40640839 gattcacttaaattatttagaatggcacaccatcaaatcagggaaaagttctcaaaagaaaatgcatatgaataacatttctactgtgttttccatccca 40640740  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 32246865 - 32246796
Alignment:
Q  134 tgggtcaaattatgaaaggtaggaatgtcatcataagggcgctgtggttgattcacctaaattatgtaga 203  Q
    |||||||||||||||||  ||||||| ||||| |||||| | ||  |||||||| ||| |||||||||||    
T  32246865 tgggtcaaattatgaaaaataggaatatcatcgtaagggtgttgaagttgattcgcctgaattatgtaga 32246796  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 36199190 - 36199114
Alignment:
Q  18 ataaaccaaatacgattcttaaacttaaacaaacccgataaagttcaagattctgaagcttagggaagtggtggagca 95  Q
    |||||| |||||| |||||||| ||||| |||||| | |||||||||||| | ||||| |||||| ||||||| ||||    
T  36199190 ataaactaaatacaattcttaatcttaa-caaacctggtaaagttcaagaatttgaagtttagggcagtggtgaagca 36199114  T

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