View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_67 (Length: 317)
Name: NF1519_low_67
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 256
Target Start/End: Original strand, 33492885 - 33493115
Alignment:
| Q |
21 |
acataatatttgtaaactaattttattcttaaattatccaataacaacagtcaatcggttgaattactaatcaaccaaatttagcaaaacaaaacgtgat |
120 |
Q |
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| T |
33492885 |
acataatagtagtaaactaattttattcttaaattatccaataacaaca-----tcagttgaattactaatcaaccaaatttagcaaaacaaaacgtgat |
33492979 |
T |
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| Q |
121 |
tttcaccatgagactcacaatcagaagccgaggcttgatcacttttaggtcaaaatgcatcagaaaaaggtgtgaaccctcgaattcgatcacaacattc |
220 |
Q |
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| T |
33492980 |
tttcaccatgagactcacaatcagaagccgaggcttgatcacttttaggtcaaaatgcatcagaaaaaggtgtgaaccctcgaattcgatcacaacattc |
33493079 |
T |
|
| Q |
221 |
aaaattcataaactagtaaatttaccaaattttacc |
256 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
33493080 |
aaaattcataaactagtaaatttaccaaattttacc |
33493115 |
T |
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