View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_68 (Length: 315)
Name: NF1519_low_68
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_68 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 31055261 - 31055564
Alignment:
| Q |
1 |
aaaatccaatcacaagggatctgcaggtgtgatgaatctatgagggaatccatagtcaatctataggccgaccgagctgtatattttttatccttgctgg |
100 |
Q |
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| T |
31055261 |
aaaatccaatcaccagggatctgcaggtgtgatgaatctatgagggactccatagtgaatctataggccgaccgagctgtatattttctatccttgctgg |
31055360 |
T |
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| Q |
101 |
atttcta------tccatctgcgacactcctctgttatggtgggctatgaacatacgggtcatcatcacaaagtaagtgttatacattaagatcatgcaa |
194 |
Q |
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| T |
31055361 |
atttctacaccagtccatctgcgacactcctctgttatggtgggctatgaacatacgggtcatcatcacaaagtaagtgttatacatcaaggtcatgcaa |
31055460 |
T |
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| Q |
195 |
tgtgtgagcttcccaacagttcgaatgaaaaatcggtgatcagttataatatgatgaatcaccaatgttctctctcaagctattgttaagaaaattgagc |
294 |
Q |
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| T |
31055461 |
tgtaagagcttcccaacagttcgaatgaaaaatcggtgatcagttataatatgatgaatcaccaatgttctctctcaagctattgttaagaaaattgagc |
31055560 |
T |
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| Q |
295 |
ttaa |
298 |
Q |
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|||| |
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| T |
31055561 |
ttaa |
31055564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 31069108 - 31069200
Alignment:
| Q |
15 |
agggatctgcaggtgtgatgaatctatgagggaatccatagtcaatctataggccgaccgagctgtatattttttatccttgctggatttcta |
107 |
Q |
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| T |
31069108 |
agggatccgcaggtgagatgaatcaatgaggaactccatagtgaatctataggccgaccgaactgtatatatttcatccttgctcaatttcta |
31069200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 31069358 - 31069396
Alignment:
| Q |
130 |
tatggtgggctatgaacatacgggtcatcatcacaaagt |
168 |
Q |
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| T |
31069358 |
tatggcgggctatgaacataagggtcatcatcacaaagt |
31069396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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