View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_69 (Length: 314)
Name: NF1519_low_69
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_69 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 28759508 - 28759234
Alignment:
| Q |
18 |
gagagaaaatgagaaagagcaagtttctgaatggggtgtttctttgaaagaatgtgaggtggtgaaggaaaacaagaaggtttcatcgccatcgcatagg |
117 |
Q |
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| T |
28759508 |
gagagaaaatgagaaagagcaagtttctgaatggggtgtttctttgaaagaatgtgaggtggtgaaggaaaacaagaaggtttcatcgccatcgcatagg |
28759409 |
T |
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| Q |
118 |
aagtttggaaggaaaagagaggagaaaaaggaagagagaacaattgatagagagtatgatgttgtgtttgtgccatctgatggtggtgattggtgttttc |
217 |
Q |
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| T |
28759408 |
aagtttggaaggaaaagagaggagaaaaaggaagagagaacaattgatagagagtatgatgttgtgtttgttccatctgatggtggtgattggtgttttc |
28759309 |
T |
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| Q |
218 |
tgtctggttctgaatctgatgattctgattggtctattgggtggttggagcctcttggttctgattttgaaagca |
292 |
Q |
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| T |
28759308 |
tgtctggttctgaatctgatgactctgattggtctattgggtggctggagcctcttggttctgattttgaaagca |
28759234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 147 - 285
Target Start/End: Complemental strand, 13756748 - 13756613
Alignment:
| Q |
147 |
ggaagagagaacaattgatagagagtatgatgttgtgtttgtgccatctgatggtggtgattggtgttttctgtctggttctgaatctgatgattctgat |
246 |
Q |
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| T |
13756748 |
ggaagagaggagagttgatagagagtatgatgttgttttagtatcatctgatggtggtggtggttgttta---tcaggctctgaatctgatgactcagat |
13756652 |
T |
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| Q |
247 |
tggtctattgggtggttggagcctcttggttctgatttt |
285 |
Q |
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| T |
13756651 |
tggtctattgggtggttagagcctcatggttctgatttt |
13756613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 27969538 - 27969589
Alignment:
| Q |
220 |
tctggttctgaatctgatgattctgattggtctattgggtggttggagcctc |
271 |
Q |
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| T |
27969538 |
tctggttctgaatctgatgattctgattggtcaattggatggttggaacctc |
27969589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 46047109 - 46047065
Alignment:
| Q |
227 |
ctgaatctgatgattctgattggtctattgggtggttggagcctc |
271 |
Q |
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| T |
46047109 |
ctgaatctgttgcttctgattggtctattggctggttggagcctc |
46047065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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