View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1519_low_71 (Length: 311)

Name: NF1519_low_71
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1519_low_71
NF1519_low_71
[»] chr3 (3 HSPs)
chr3 (192-234)||(46910523-46910565)
chr3 (90-119)||(9588732-9588761)
chr3 (90-119)||(21959751-21959780)
[»] chr8 (2 HSPs)
chr8 (90-122)||(25400459-25400491)
chr8 (90-122)||(25496638-25496670)
[»] chr2 (2 HSPs)
chr2 (192-260)||(27892856-27892924)
chr2 (192-232)||(24189996-24190036)
[»] chr4 (1 HSPs)
chr4 (90-119)||(37371475-37371504)


Alignment Details
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 46910565 - 46910523
Alignment:
Q  192 aagaccatccccaatttgccacactatatttctttaaaactcc 234  Q
    ||||||||||||||||| ||||||||||||||||| |||||||    
T  46910565 aagaccatccccaattttccacactatatttctttgaaactcc 46910523  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 119
Target Start/End: Original strand, 9588732 - 9588761
Alignment:
Q  90 agggtatgatttatcaattataccctttgt 119  Q
    ||||||||||||||||||||||||||||||    
T  9588732 agggtatgatttatcaattataccctttgt 9588761  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 119
Target Start/End: Complemental strand, 21959780 - 21959751
Alignment:
Q  90 agggtatgatttatcaattataccctttgt 119  Q
    ||||||||||||||||||||||||||||||    
T  21959780 agggtatgatttatcaattataccctttgt 21959751  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 25400459 - 25400491
Alignment:
Q  90 agggtatgatttatcaattataccctttgttaa 122  Q
    |||||||||||||||||||||||||||||||||    
T  25400459 agggtatgatttatcaattataccctttgttaa 25400491  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 25496638 - 25496670
Alignment:
Q  90 agggtatgatttatcaattataccctttgttaa 122  Q
    |||||||||||||||||||||||||||||||||    
T  25496638 agggtatgatttatcaattataccctttgttaa 25496670  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 27892856 - 27892924
Alignment:
Q  192 aagaccatccccaatttgccacactatatttctttaaaactcctcccagcatagcaagggctttccaca 260  Q
    ||||||||| |||||||| |||||||||||| ||| ||||||| |    ||||||||||||||||||||    
T  27892856 aagaccatctccaatttgtcacactatatttttttgaaactcccctgctcatagcaagggctttccaca 27892924  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 24190036 - 24189996
Alignment:
Q  192 aagaccatccccaatttgccacactatatttctttaaaact 232  Q
    |||||||||| |||||||||| ||||||||||||| |||||    
T  24190036 aagaccatcctcaatttgccaaactatatttctttgaaact 24189996  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 119
Target Start/End: Complemental strand, 37371504 - 37371475
Alignment:
Q  90 agggtatgatttatcaattataccctttgt 119  Q
    ||||||||||||||||||||||||||||||    
T  37371504 agggtatgatttatcaattataccctttgt 37371475  T

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