View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_77 (Length: 278)
Name: NF1519_low_77
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_77 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 48729505 - 48729245
Alignment:
| Q |
1 |
ctattatgttggcctgagagtttgtcattttcaaagttttaataatttttcgcttctcctattttaaaaaattaattaattcagctatggtcatttcata |
100 |
Q |
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| T |
48729505 |
ctattatgttggccttagagtttgacattttcaaagtattaataatttttcgcttctcctatttaaaaaaattaattaattcagctatggtcatttcata |
48729406 |
T |
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| Q |
101 |
ttgtgcaggcagttgaattgttgatagatagcaatatagacataaatgccaagaatttagatgaagaaacagcattggacatagtggagcagattcagag |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
48729405 |
ttgtgcaggcagttggattgttgatagatagcaatatagacataaatgccaagaatttagatgaacaaacagcattggacatagtggagcagattcagag |
48729306 |
T |
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| Q |
201 |
ccaagtttatagtgcagaaatgaaggacatgttgatcaaagcaggagctttgcatggtttt |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48729305 |
ccaagtttatagtgcagaaatgaaggacatgttgatcaaagcaggagctttgcatggtttt |
48729245 |
T |
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