View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1519_low_78 (Length: 278)
Name: NF1519_low_78
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_78 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 30733879 - 30734126
Alignment:
| Q |
17 |
aaaagttaaaataatgattaagtgatcaaaacacaccttcatgctttgcttaattttgaaacaaacagaattggttcttcgtatttgtcctctaatttgg |
116 |
Q |
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| T |
30733879 |
aaaagttaaaagaatgattaagtgatcataacacaccttcatgctt-gcttaattttgaaagaaacagaagtggctcttcgtacttgtcctctgctttgg |
30733977 |
T |
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| Q |
117 |
aactgagcatgtagtacatagtatttgttatgatatatatggacattggtgtcgataattagttgcttagtcgctgttttgtaaaggttatattatagtc |
216 |
Q |
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| T |
30733978 |
aactgagcttgtagtacatagtatttgttataatatatatgtacattggtgtcgataattagttgcttagtcgctgttttgtaaaggttctattatagtc |
30734077 |
T |
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| Q |
217 |
gtagatataaagaaaaggatnnnnnnnntactaaacaatgaagttgttg |
265 |
Q |
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| T |
30734078 |
gtagatagaaagaaaaggataaaaaaaatactaaacaatgaggttgttg |
30734126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 30715465 - 30715563
Alignment:
| Q |
10 |
aaaaataaaaagttaaaataatgattaagtgatcaaaacacaccttcatgctttgcttaattttgaaacaaacagaattggttcttcgtatttgtcctct |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| ||||||||||||||||| |||| |
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| T |
30715465 |
aaaaagaaaaagttaaaataatgattaagtgatcaaaacacaccttcatg-attgcttgagtttgaaacaaacagaagtggttcttcgtatttgttctct |
30715563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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