View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1519_low_81 (Length: 271)
Name: NF1519_low_81
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1519_low_81 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 25 - 262
Target Start/End: Original strand, 53820054 - 53820291
Alignment:
| Q |
25 |
gaacaaaactatctactgcgacaaggtaagagtattgagcagtagaaaacgtgaattgatcaaagccctgaaaactttgtcactaacactttcaatacca |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53820054 |
gaacaaaactatctactgcgacaaggtaagagtattgagcagtagaaaacgtgaattgatcaaagccctgaaaactttgtcactaacactttcaatacca |
53820153 |
T |
|
| Q |
125 |
caaatattttcctctaaatcacgcattctcttcaaaaccgatctcacttcttcatctcctttctttttcaaattcccaatattttcaacctcattcaaaa |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53820154 |
caaatattttcctctaaatcacgcattctcttcaaaaccgatctcacttcttcatctcctttctttttcaaattcccaatattttcaacctcattcaaaa |
53820253 |
T |
|
| Q |
225 |
ccttctgaatttcttcaatcccttccaactccttcttc |
262 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
53820254 |
ccttctgaatttcttcaatcccttctaactccttcttc |
53820291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 32337290 - 32337189
Alignment:
| Q |
108 |
taacactttcaataccacaaatattttcctctaaatcacgcattctcttcaaaaccgatctcacttcttcatctcctttctttttcaaattcccaatatt |
207 |
Q |
| |
|
||||||||| |||||| || ||| ||| | | |||| ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32337290 |
taacacttttaataccgcacatacattcttgtgaatctcgcatcctcttcaaaacc-atctcacttcttcatcttctttctttttcaaattcccaatatt |
32337192 |
T |
|
| Q |
208 |
ttc |
210 |
Q |
| |
|
||| |
|
|
| T |
32337191 |
ttc |
32337189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University