View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1519_low_85 (Length: 266)

Name: NF1519_low_85
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1519_low_85
NF1519_low_85
[»] scaffold0256 (1 HSPs)
scaffold0256 (171-254)||(5591-5674)
[»] chr8 (5 HSPs)
chr8 (171-254)||(39619282-39619365)
chr8 (175-254)||(6419469-6419548)
chr8 (175-254)||(18382785-18382864)
chr8 (60-100)||(30650915-30650955)
chr8 (60-113)||(6446192-6446245)
[»] chr7 (10 HSPs)
chr7 (171-254)||(46807653-46807736)
chr7 (174-254)||(21951350-21951430)
chr7 (175-254)||(34639922-34640001)
chr7 (175-254)||(34640983-34641062)
chr7 (175-254)||(42052198-42052277)
chr7 (173-254)||(6615485-6615566)
chr7 (177-254)||(14077728-14077804)
chr7 (177-254)||(14387756-14387832)
chr7 (53-116)||(23402045-23402108)
chr7 (53-107)||(25470742-25470796)
[»] chr5 (10 HSPs)
chr5 (171-254)||(5809725-5809808)
chr5 (173-254)||(1595899-1595980)
chr5 (173-254)||(16483401-16483482)
chr5 (173-254)||(39562468-39562549)
chr5 (173-254)||(40833124-40833205)
chr5 (175-254)||(16481068-16481147)
chr5 (53-107)||(8762869-8762923)
chr5 (72-122)||(25654654-25654704)
chr5 (68-122)||(31878690-31878744)
chr5 (67-122)||(10053897-10053953)
[»] chr3 (10 HSPs)
chr3 (171-254)||(33953093-33953176)
chr3 (173-250)||(22400860-22400937)
chr3 (173-254)||(28415608-28415689)
chr3 (173-254)||(37967631-37967712)
chr3 (174-254)||(3337515-3337595)
chr3 (171-247)||(47331602-47331678)
chr3 (173-254)||(4063932-4064013)
chr3 (53-95)||(18271876-18271918)
chr3 (61-125)||(5125522-5125586)
chr3 (68-121)||(38392316-38392369)
[»] chr4 (9 HSPs)
chr4 (171-254)||(27021809-27021892)
chr4 (171-254)||(36317757-36317840)
chr4 (171-254)||(36331966-36332049)
chr4 (175-254)||(5946757-5946836)
chr4 (171-254)||(34804735-34804818)
chr4 (171-254)||(44471834-44471916)
chr4 (53-107)||(5914943-5914997)
chr4 (61-107)||(9743908-9743954)
chr4 (68-100)||(2708218-2708250)
[»] chr1 (15 HSPs)
chr1 (175-254)||(28642975-28643054)
chr1 (175-254)||(32521179-32521258)
chr1 (171-254)||(43640163-43640246)
chr1 (173-254)||(2025904-2025985)
chr1 (173-250)||(45539918-45539995)
chr1 (171-254)||(24778317-24778403)
chr1 (171-254)||(8109099-8109182)
chr1 (175-254)||(18413107-18413187)
chr1 (171-250)||(49006630-49006705)
chr1 (72-123)||(3120554-3120605)
chr1 (67-125)||(47555058-47555116)
chr1 (60-113)||(10598200-10598253)
chr1 (53-102)||(42663236-42663285)
chr1 (65-113)||(4146705-4146753)
chr1 (53-125)||(43579550-43579622)
[»] scaffold0009 (1 HSPs)
scaffold0009 (175-254)||(196082-196161)
[»] chr6 (6 HSPs)
chr6 (175-254)||(18900326-18900405)
chr6 (171-254)||(19428950-19429033)
chr6 (171-254)||(22513155-22513238)
chr6 (53-107)||(25441808-25441862)
chr6 (53-107)||(4487729-4487783)
chr6 (72-125)||(18306573-18306626)
[»] chr2 (5 HSPs)
chr2 (185-254)||(40266275-40266344)
chr2 (60-122)||(19093760-19093822)
chr2 (60-107)||(7565612-7565659)
chr2 (53-107)||(32652720-32652774)
chr2 (60-116)||(6178086-6178142)
[»] scaffold0088 (1 HSPs)
scaffold0088 (179-254)||(23199-23273)
[»] scaffold0001 (1 HSPs)
scaffold0001 (74-126)||(66073-66125)


Alignment Details
Target: scaffold0256 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 5674 - 5591
Alignment:
Q  171 caattaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5674 caattaatttttaagagatatcagtttgaacgtactcttttttctatcttccggtaaatttaaaaaggcgaatctgacaatttt 5591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 39619365 - 39619282
Alignment:
Q  171 caattaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39619365 caattaatttttaagagatgtcagtttgaacgtactcttttttctatcttccggtaaatttaaaaaggcgaatctgacaatttt 39619282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 6419469 - 6419548
Alignment:
Q  175 taatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| |||||||||||||||    
T  6419469 taatttttaagagatatcagtttgaacgtactcttttttctattttctggtaaatttaaaaaggcgaatctgacaatttt 6419548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 18382864 - 18382785
Alignment:
Q  175 taatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| |||||||||||||||    
T  18382864 taatttttaagagatatcagtttgaacgtactcttttttctattttctggtaaatttaaaaaggcgaatctgacaatttt 18382785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 30650915 - 30650955
Alignment:
Q  60 cagtcaagaaattgacttttttaaaaatgttattttgttta 100  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  30650915 cagtcaagaaattgacttttttgaaaaagttattttgttta 30650955  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 6446192 - 6446245
Alignment:
Q  60 cagtcaagaaattgacttttttaaaaatgttattttgtttaaccaatataataa 113  Q
    ||||||||||| ||||||||||||||| ||| |||| |||| |||||| |||||    
T  6446192 cagtcaagaaactgacttttttaaaaaagttgttttttttagccaatagaataa 6446245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 46807653 - 46807736
Alignment:
Q  171 caattaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46807653 caattaatttttaagagatgtcagtttgaacgtactcttttttctatcttccggtaaatttaaaaaggcgaatctgacaatttt 46807736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 21951430 - 21951350
Alignment:
Q  174 ttaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  || |||||||||||    
T  21951430 ttaatttttaagagatatcagtttgaaagtactattttttctatcttccggtaaatttaaaaaggcaaacctgacaatttt 21951350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 34640001 - 34639922
Alignment:
Q  175 taatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| |||||||||||||||    
T  34640001 taatttttaagagatatcagtttgaacgtactcttttttctattttctggtaaatttaaaaaggcgaatctgacaatttt 34639922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 34641062 - 34640983
Alignment:
Q  175 taatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| |||||||||||||||    
T  34641062 taatttttaagagatatcagtttgaacgtactcttttttctattttctggtaaatttaaaaaggcgaatctgacaatttt 34640983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 42052198 - 42052277
Alignment:
Q  175 taatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| |||||||||||||||    
T  42052198 taatttttaagagatatcagtttgaacgtactcttttttctattttctggtaaatttaaaaaggcgaatctgacaatttt 42052277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 6615485 - 6615566
Alignment:
Q  173 attaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||||||||||||||||||| ||||| | |||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  6615485 attaatttttaagagatatctgtttgtacgtactcttttttctatcttccgataaatttaaaaaggcgaatctgacaatttt 6615566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 254
Target Start/End: Original strand, 14077728 - 14077804
Alignment:
Q  177 atttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    ||||| |||||||||||||||||| |||||| ||||||||||||  ||| |||||||||||| || ||||||||||||    
T  14077728 attttgaagagatatcagtttgaatgtactc-tttttctatctttaggtgaatttaaaaaggcgactctgacaatttt 14077804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 254
Target Start/End: Original strand, 14387756 - 14387832
Alignment:
Q  177 atttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    ||||| |||||||||||||||||| |||||| ||||||||||||  ||| |||||||||||| || ||||||||||||    
T  14387756 attttgaagagatatcagtttgaatgtactc-tttttctatctttaggtgaatttaaaaaggcgactctgacaatttt 14387832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 23402045 - 23402108
Alignment:
Q  53 tatggttcagtcaagaaattgacttttttaaaaatgttattttgtttaaccaatataataactg 116  Q
    |||||| ||||||| ||| ||||||||||||||| ||||||||||||| ||||||  |||||||    
T  23402045 tatggtgcagtcaaaaaactgacttttttaaaaaagttattttgtttagccaatagtataactg 23402108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 25470796 - 25470742
Alignment:
Q  53 tatggttcagtcaagaaattgacttttttaaaaatgttattttgtttaaccaata 107  Q
    |||||| ||||||| ||| ||||||||||||||| || |||||||||||||||||    
T  25470796 tatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaata 25470742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 5809808 - 5809725
Alignment:
Q  171 caattaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5809808 caattaatttttaagagatgtcagtttgaacgtactcttttttctatcttccggtaaatttaaaaaggcgaatctgacaatttt 5809725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 173 - 254
Target Start/End: Complemental strand, 1595980 - 1595899
Alignment:
Q  173 attaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||| ||||||    
T  1595980 attattttttaagagatatcagtttgaacgtacttttttttctatcttccggtaaatttaaaaaggcgaatctgagaatttt 1595899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 16483401 - 16483482
Alignment:
Q  173 attaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||||||||||||||||||| ||||| | |||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  16483401 attaatttttaagagatatctgtttgtacgtactcttttttctatcttccgataaatttaaaaaggcgaatctgacaatttt 16483482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 173 - 254
Target Start/End: Complemental strand, 39562549 - 39562468
Alignment:
Q  173 attaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||  |||||||||||||||    
T  39562549 attaatttttaagagatatcagtttgtacgtactcttttttctatctttcggtaaatttaaaaagtcgaatctgacaatttt 39562468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 40833124 - 40833205
Alignment:
Q  173 attaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  40833124 attattttttaagagatatcagtttgaacttactcttttttctatcttccggtaaatttaaaaaggcgaatctgagaatttt 40833205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 16481068 - 16481147
Alignment:
Q  175 taatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| |||||||| ||||||    
T  16481068 taatttttaagagatatcagtttgaacgtactcttttttctattttctggtaaatttaaaaaggcgaatctgataatttt 16481147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 8762869 - 8762923
Alignment:
Q  53 tatggttcagtcaagaaattgacttttttaaaaatgttattttgtttaaccaata 107  Q
    |||||| ||||||| ||| ||||||||||||||| || |||||||||||||||||    
T  8762869 tatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaata 8762923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 25654704 - 25654654
Alignment:
Q  72 tgacttttttaaaaatgttattttgtttaaccaatataataactgttgatg 122  Q
    ||||||||||| ||| ||||||||||||||||||||  |||| ||||||||    
T  25654704 tgacttttttagaaaagttattttgtttaaccaatagtataattgttgatg 25654654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 31878744 - 31878690
Alignment:
Q  68 aaattgacttttttaaaaatgttattttgtttaaccaatataataactgttgatg 122  Q
    ||||||||||||| ||||| |||| |||||||||||||||  |||||||| ||||    
T  31878744 aaattgactttttaaaaaaagttagtttgtttaaccaatagtataactgtcgatg 31878690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 10053953 - 10053897
Alignment:
Q  67 gaaattgacttttttaaaaatgttat-tttgtttaaccaatataataactgttgatg 122  Q
    ||||||||||||||| |||| ||||| |||||||| ||||||  |||||||||||||    
T  10053953 gaaattgacttttttgaaaaagttatgtttgtttacccaatagtataactgttgatg 10053897  T

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Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 33953176 - 33953093
Alignment:
Q  171 caattaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  33953176 caattaatttttaagagatatcagtttgaacgtactcttttttctatcttccggtaaatttaaaaagacgaatctgacaatttt 33953093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 22400860 - 22400937
Alignment:
Q  173 attaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaa 250  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22400860 attaatttttaagagatatcaatttgaacgtactcttttttctatcttccggtaaatttaaaaaggcgaatctgacaa 22400937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 173 - 254
Target Start/End: Complemental strand, 28415689 - 28415608
Alignment:
Q  173 attaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||||||||||||||||||  ||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28415689 attaatttttaagagatatatgtttgtacgtactcttttttctatcttccggtaaatttaaaaaggcgaatctgacaatttt 28415608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 37967631 - 37967712
Alignment:
Q  173 attaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||||||||||||||||||| ||||| | |||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  37967631 attaatttttaagagatatctgtttgtacgtactcttttttctatcttccgataaatttaaaaaggcgaatctgacaatttt 37967712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 3337595 - 3337515
Alignment:
Q  174 ttaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    ||||||||| ||| ||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  3337595 ttaattttttagatatatcagtttgaacgtactcttttttctatcttctggtaaatttaaaaaggcgaatctgacaatttt 3337515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 47331678 - 47331602
Alignment:
Q  171 caattaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctga 247  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||  ||||||||    
T  47331678 caattaatttttaagagatatcagtttgaacgtactcttttttctatcttctggtaaatttaaaaagacgaatctga 47331602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 254
Target Start/End: Complemental strand, 4064013 - 4063932
Alignment:
Q  173 attaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||||||||||||||||||| ||||| | |||||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  4064013 attaatttttaagagatatctgtttgtacgtactcttttttctatcttccgataaatttaaaaaggcgaatctaacaatttt 4063932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 18271876 - 18271918
Alignment:
Q  53 tatggttcagtcaagaaattgacttttttaaaaatgttatttt 95  Q
    |||||| ||||||||||||||||||||||||||| ||||||||    
T  18271876 tatggtgcagtcaagaaattgacttttttaaaaaagttatttt 18271918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 5125586 - 5125522
Alignment:
Q  61 agtcaagaaattgacttttttaaaaatgttattttgtttaaccaatataataactgttgatgcca 125  Q
    |||||||||| |||||||||| |||| |||||||| |||||||||||  |||| |||| ||||||    
T  5125586 agtcaagaaaatgacttttttgaaaaagttattttatttaaccaataacataattgttaatgcca 5125522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 38392316 - 38392369
Alignment:
Q  68 aaattgacttttttaaaaatgttattttgtttaaccaatataataactgttgat 121  Q
    ||||||||||||||| ||| ||||||||||||| ||||||  ||||||| ||||    
T  38392316 aaattgacttttttagaaaagttattttgtttagccaataatataactgctgat 38392369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 27021892 - 27021809
Alignment:
Q  171 caattaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  27021892 caattaatttttaagagatatcaggttgaacgtactcttttttctaccttccggtaaatttaaaaaggcgaatctgacaatttt 27021809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 36317840 - 36317757
Alignment:
Q  171 caattaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  36317840 caattaatttttaagagatataagtttgaacgtactcttttttctatcttccggtaaattttaaaaggcgaatctgacaatttt 36317757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 36332049 - 36331966
Alignment:
Q  171 caattaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  36332049 caattaatttttaagagatataagtttgaacgtactcttttttctatcttccggtaaattttaaaaggcgaatctgacaatttt 36331966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 5946757 - 5946836
Alignment:
Q  175 taatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| |||||||||||||||    
T  5946757 taatttttaagagatatcagtttgaacgtactcttttttctattttctggtaaatttaaaaaggcgaatctgacaatttt 5946836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 34804735 - 34804818
Alignment:
Q  171 caattaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||| ||| |||||||||||||||| |||||||||||||||    
T  34804735 caattaatttttaagagatatcagtttgaacatactcttttttctattttctggtaaatttaaaaaggcgaatctgacaatttt 34804818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 44471834 - 44471916
Alignment:
Q  171 caattaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    ||||||||||||||||| |||||||||||| ||| |||||| |||||||||||||||||||||||||| |||||||||||||||    
T  44471834 caattaatttttaagaggtatcagtttgaacgtagtctttt-tctatcttccggtaaatttaaaaaggcgaatctgacaatttt 44471916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 5914943 - 5914997
Alignment:
Q  53 tatggttcagtcaagaaattgacttttttaaaaatgttattttgtttaaccaata 107  Q
    |||||| ||||||| ||| ||||||||||||||| || |||||||||||||||||    
T  5914943 tatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaata 5914997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 9743954 - 9743908
Alignment:
Q  61 agtcaagaaattgacttttttaaaaatgttattttgtttaaccaata 107  Q
    |||||| |||||||||||||| |||| ||||||||||||||||||||    
T  9743954 agtcaaaaaattgacttttttgaaaaagttattttgtttaaccaata 9743908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 2708250 - 2708218
Alignment:
Q  68 aaattgacttttttaaaaatgttattttgttta 100  Q
    ||||||||||||||||||| |||||||||||||    
T  2708250 aaattgacttttttaaaaaagttattttgttta 2708218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 28643054 - 28642975
Alignment:
Q  175 taatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  28643054 taatttttaagagatatcagtttgaacgtactcttttttctatcttctggtaaatttaaaaaggcgaatctgacaatttt 28642975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 32521258 - 32521179
Alignment:
Q  175 taatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  32521258 taatttttaagagatatcagtttgaacgtactcttttttctatcttctggtaaatttaaaaaggcgaatctgacaatttt 32521179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 43640246 - 43640163
Alignment:
Q  171 caattaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  43640246 caattaatttttaagagatatcagtttgaacatactcttttttctatcttctggtaaatttaaaaaggcgaatctgacaatttt 43640163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 2025904 - 2025985
Alignment:
Q  173 attaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  2025904 attattttttaagagatatcagtttgaacgtactcttttttctatcttccggtaaatttaaaaaggcgaatctgagaatttt 2025985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 45539918 - 45539995
Alignment:
Q  173 attaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaa 250  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45539918 attaatttttaagagatatcaatttgaacgtactcttttttctatcttccggtaaatttaaaaaggcgaatctgacaa 45539995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 24778317 - 24778403
Alignment:
Q  171 caattaatttttaagagatatcagt---ttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24778317 caattaatttttaagagatatcagtagtttgaacgtactcttttttctatcttccggtaaatttaaaaaggcgaatctgacaatttt 24778403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 8109099 - 8109182
Alignment:
Q  171 caattaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||| ||||||||    
T  8109099 caattaattgttaagagatatcagtttgaacgtactcttttttctatcttccggtaaatttaaaaaggcaaatctcacaatttt 8109182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 18413107 - 18413187
Alignment:
Q  175 taatttttaagagatatcagtttgaaagtactc-ttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||||||||||||||||||||||||| |||||| |||||| ||||||| |||||||||||||||| |||||||||||||||    
T  18413107 taatttttaagagatatcagtttgaacgtactctttttttttatcttctggtaaatttaaaaaggcgaatctgacaatttt 18413187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 49006630 - 49006705
Alignment:
Q  171 caattaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaa 250  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||    ||||||||||||||| |||||||||||    
T  49006630 caattaatttttaagagatatcaatttgaacgtactcttttttctatct----gtaaatttaaaaaggcgaatctgacaa 49006705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 3120554 - 3120605
Alignment:
Q  72 tgacttttttaaaaatgttattttgtttaaccaatataataactgttgatgc 123  Q
    |||||||||||||||  |||||||||||||||||||  ||||||||||||||    
T  3120554 tgacttttttaaaaaaattattttgtttaaccaataatataactgttgatgc 3120605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 47555116 - 47555058
Alignment:
Q  67 gaaattgacttttttaaaaatgttattttgtttaaccaatataataactgttgatgcca 125  Q
    |||| |||||||||| |||| ||||||||||||||||||||  ||||||||||| ||||    
T  47555116 gaaactgacttttttgaaaaagttattttgtttaaccaatagtataactgttgaggcca 47555058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 10598253 - 10598200
Alignment:
Q  60 cagtcaagaaattgacttttttaaaaatgttattttgtttaaccaatataataa 113  Q
    ||||||||||| |||||||||| |||| ||| |||||||||||||||| |||||    
T  10598253 cagtcaagaaactgacttttttgaaaaagttgttttgtttaaccaatagaataa 10598200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 42663236 - 42663285
Alignment:
Q  53 tatggttcagtcaagaaattgacttttttaaaaatgttattttgtttaac 102  Q
    |||||| |||||| ||||||||||||||| |||| |||||||| ||||||    
T  42663236 tatggtgcagtcacgaaattgacttttttgaaaaagttattttatttaac 42663285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 4146705 - 4146753
Alignment:
Q  65 aagaaattgacttttttaaaaatgttattttgtttaaccaatataataa 113  Q
    |||||| |||||||||| |||| |||||||||||||| ||||| |||||    
T  4146705 aagaaactgacttttttgaaaaagttattttgtttaatcaatagaataa 4146753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 43579622 - 43579550
Alignment:
Q  53 tatggttcagtcaagaaattgacttttttaaaaatgttattttgtttaaccaatataataactgttgatgcca 125  Q
    |||||| ||||||  ||| ||||||||| |||||||||||||||||||  |||||  ||||| ||| ||||||    
T  43579622 tatggtgcagtcagtaaactgactttttaaaaaatgttattttgtttagtcaatagtataaccgttaatgcca 43579550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 196161 - 196082
Alignment:
Q  175 taatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| |||||||||||||||    
T  196161 taatttttaagagatatcagtttgaacgtactcttttttctattttctggtaaatttaaaaaggcgaatctgacaatttt 196082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 18900405 - 18900326
Alignment:
Q  175 taatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||| |||||||||||||||    
T  18900405 taatttttaagagatatcagtttgaacgtactcttttttttatcttctggtaaatttaaaaaggcgaatctgacaatttt 18900326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 19428950 - 19429033
Alignment:
Q  171 caattaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||    
T  19428950 caattaatttttaagagatgtcagtttgaacgtactcttttttctatcttccagtaaatttaaaaaggcgaatatgacaatttt 19429033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 22513155 - 22513238
Alignment:
Q  171 caattaatttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    ||||||||||||||||||| |||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||| ||||||||    
T  22513155 caattaatttttaagagatgtcagcttgaacgtactcttttttctatcttccagtaaatttaaaaaggcgaatctaacaatttt 22513238  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 25441862 - 25441808
Alignment:
Q  53 tatggttcagtcaagaaattgacttttttaaaaatgttattttgtttaaccaata 107  Q
    |||||| ||||||| ||| ||||||||||||||| || |||||||||||||||||    
T  25441862 tatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaata 25441808  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 4487729 - 4487783
Alignment:
Q  53 tatggttcagtcaagaaattgacttttttaaaaatgttattttgtttaaccaata 107  Q
    |||||| |||| || ||| ||||||||||||||| || |||||||||||||||||    
T  4487729 tatggtgcagttaaaaaaatgacttttttaaaaaagtcattttgtttaaccaata 4487783  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 18306573 - 18306626
Alignment:
Q  72 tgacttttttaaaaatgttattttgtttaaccaatataataactgttgatgcca 125  Q
    ||||||||||  |||||| |||||||||| |||||| ||||| |||||||||||    
T  18306573 tgacttttttggaaatgtcattttgtttagccaatagaataaatgttgatgcca 18306626  T

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Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 40266275 - 40266344
Alignment:
Q  185 gagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40266275 gagatatcagtttgaacgtactcttttttctatcttccggtaaatttaaaaaggcgaatctgacaatttt 40266344  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 122
Target Start/End: Complemental strand, 19093822 - 19093760
Alignment:
Q  60 cagtcaagaaattgacttttttaaaaatgttattttgtttaaccaatataataactgttgatg 122  Q
    ||||||| ||||||||||||||||||| |||| ||||||||| |||||  |||| ||||||||    
T  19093822 cagtcaaaaaattgacttttttaaaaaagttaatttgtttaatcaatagtataattgttgatg 19093760  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 7565659 - 7565612
Alignment:
Q  60 cagtcaagaaattgacttttttaaaaatgttattttgtttaaccaata 107  Q
    ||||||| ||| ||||||||||||||| || |||||||||||||||||    
T  7565659 cagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaata 7565612  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 32652774 - 32652720
Alignment:
Q  53 tatggttcagtcaagaaattgacttttttaaaaatgttattttgtttaaccaata 107  Q
    |||||| ||||||| ||| | ||||||||||||| || |||||||||||||||||    
T  32652774 tatggtgcagtcaaaaaaataacttttttaaaaaagtcattttgtttaaccaata 32652720  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 6178142 - 6178086
Alignment:
Q  60 cagtcaagaaattgacttttttaaaaatgttattttgtttaaccaatataataactg 116  Q
    ||||||| ||| ||||||||||| ||| ||||||||||||| ||||||  |||||||    
T  6178142 cagtcaaaaaactgacttttttagaaaagttattttgtttagccaatagtataactg 6178086  T

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Target: scaffold0088 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 254
Target Start/End: Original strand, 23199 - 23273
Alignment:
Q  179 ttttaagagatatcagtttgaaagtactcttttttctatcttccggtaaatttaaaaaggtgaatctgacaatttt 254  Q
    |||||||||| ||||| ||||| ||||| |||| ||||||||||||||||||||||||||||||| | ||||||||    
T  23199 ttttaagagacatcagattgaatgtactatttt-tctatcttccggtaaatttaaaaaggtgaatttcacaatttt 23273  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 66125 - 66073
Alignment:
Q  74 acttttttaaaaatgttattttgtttaaccaatataataactgttgatgccaa 126  Q
    |||||||| ||||  |||||||||||| ||||||  |||||||||||||||||    
T  66125 acttttttgaaaaaattattttgtttagccaatagtataactgttgatgccaa 66073  T

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