View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1519_low_87 (Length: 264)

Name: NF1519_low_87
Description: NF1519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1519_low_87
NF1519_low_87
[»] chr6 (42 HSPs)
chr6 (25-261)||(27676802-27677038)
chr6 (25-261)||(27592203-27592439)
chr6 (5-264)||(28793120-28793379)
chr6 (5-264)||(28786999-28787258)
chr6 (5-264)||(27610282-27610541)
chr6 (5-264)||(27717661-27717920)
chr6 (8-264)||(27603869-27604125)
chr6 (5-264)||(28781862-28782121)
chr6 (5-264)||(31285320-31285579)
chr6 (11-264)||(27426780-27427033)
chr6 (25-261)||(27337277-27337513)
chr6 (25-261)||(27398017-27398253)
chr6 (25-264)||(26656726-26656965)
chr6 (25-264)||(26762697-26762936)
chr6 (25-264)||(26884831-26885070)
chr6 (25-264)||(27530483-27530722)
chr6 (28-264)||(26647240-26647476)
chr6 (28-264)||(26753208-26753444)
chr6 (25-261)||(26862344-26862580)
chr6 (5-264)||(26803207-26803466)
chr6 (157-264)||(27215213-27215320)
chr6 (5-264)||(27705566-27705825)
chr6 (29-261)||(26624035-26624267)
chr6 (29-261)||(26730012-26730244)
chr6 (5-261)||(27679714-27679970)
chr6 (25-261)||(27697768-27698004)
chr6 (25-264)||(26143629-26143868)
chr6 (135-264)||(25511653-25511782)
chr6 (211-264)||(25580483-25580536)
chr6 (135-264)||(26056683-26056812)
chr6 (135-264)||(26076653-26076782)
chr6 (148-264)||(25492624-25492740)
chr6 (172-264)||(28140296-28140388)
chr6 (211-264)||(25483820-25483873)
chr6 (211-264)||(25539304-25539357)
chr6 (211-264)||(26824580-26824633)
chr6 (211-264)||(26937790-26937843)
chr6 (209-257)||(28097809-28097857)
chr6 (209-264)||(29843353-29843408)
chr6 (209-245)||(25074647-25074683)
chr6 (209-257)||(26849480-26849528)
chr6 (209-257)||(26975719-26975767)
[»] scaffold0419 (1 HSPs)
scaffold0419 (5-264)||(8248-8507)
[»] scaffold0277 (2 HSPs)
scaffold0277 (5-264)||(12837-13096)
scaffold0277 (8-264)||(3877-4133)
[»] scaffold0349 (1 HSPs)
scaffold0349 (5-264)||(2701-2960)
[»] chr4 (7 HSPs)
chr4 (29-264)||(18678742-18678977)
chr4 (25-264)||(18698578-18698817)
chr4 (5-261)||(18723243-18723499)
chr4 (25-261)||(18730682-18730918)
chr4 (29-261)||(18654659-18654891)
chr4 (11-264)||(18074522-18074775)
chr4 (209-264)||(5090319-5090374)
[»] scaffold0003 (1 HSPs)
scaffold0003 (11-264)||(60330-60583)
[»] chr1 (3 HSPs)
chr1 (29-264)||(28163562-28163796)
chr1 (29-264)||(28126861-28127096)
chr1 (20-264)||(267517-267761)
[»] chr8 (1 HSPs)
chr8 (5-264)||(29273000-29273259)
[»] chr5 (2 HSPs)
chr5 (209-264)||(16691628-16691683)
chr5 (26-114)||(16691778-16691866)
[»] chr2 (1 HSPs)
chr2 (209-257)||(3280427-3280475)


Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 42)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 25 - 261
Target Start/End: Original strand, 27676802 - 27677038
Alignment:
Q  25 gtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatcttaattttcagttga 124  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||    
T  27676802 gtcaacatcatcaagaatcaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctaacttaatttcaagttga 27676901  T
Q  125 agtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcag 224  Q
    ||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27676902 agtgtttttaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaagaaaacatgagcattcaaattgatcag 27677001  T
Q  225 caataaaattataaattgcttttgcaagtgttgattt 261  Q
    |||||||||||||||||||||| ||||||||||||||    
T  27677002 caataaaattataaattgctttcgcaagtgttgattt 27677038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 25 - 261
Target Start/End: Original strand, 27592203 - 27592439
Alignment:
Q  25 gtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatcttaattttcagttga 124  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||    
T  27592203 gtcaacatcatcaagaatcaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctaacttaatttcaagttga 27592302  T
Q  125 agtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcag 224  Q
    ||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27592303 agtgtttttaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaagaaaacatgagcattcaaattgatcag 27592402  T
Q  225 caataaaattataaattgcttttgcaagtgttgattt 261  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  27592403 caataaagttataaattgctttcgcaagtgttgattt 27592439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 5 - 264
Target Start/End: Complemental strand, 28793379 - 28793120
Alignment:
Q  5 gcatgtagttgcttcatatcgtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttc 104  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||| | ||||||||| || ||||||| ||    
T  28793379 gcatgtagttgcttcatatcgtcaacatcatcgagaatcaaaagaatcttctttgtatgtagcctttcctttatataaggaattccctcactaacacctc 28793280  T
Q  105 ctatcttaattttcagttgaagtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaaca 204  Q
    ||| ||||||||||||||||||| |||  ||||||||| ||| |||||||| ||||||  |||||||||||||||||||| |||||||||||| ||||||    
T  28793279 ctaacttaattttcagttgaagtgtttttaaaaggagcacctcctggagatgtttcaatctatttgaagctgaactctctctcacattttcaagaaaaca 28793180  T
Q  205 tgagcattcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  28793179 tgagcattcaaattgatcagaaataaaattataaattgcttttccaagtgttgatttacc 28793120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 5 - 264
Target Start/End: Complemental strand, 28787258 - 28786999
Alignment:
Q  5 gcatgtagttgcttcatatcgtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttc 104  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||  ||| |||||||||||||| | ||||||||| || ||||||| ||    
T  28787258 gcatgtagttgcttcatatcgtcaacatcatcgagaatcaaaagagtcttctttgtatgcagcctttcctttatataaggaattccctcactaacacctc 28787159  T
Q  105 ctatcttaattttcagttgaagtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaaca 204  Q
    ||| ||||||||||||||||||| |||  ||||||||| ||| |||||||| |||||| ||||||||||||||| ||||| |||||||||||| ||||||    
T  28787158 ctaacttaattttcagttgaagtgtttttaaaaggagcacctcctggagatgtttcaatttatttgaagctgaattctctctcacattttcaagaaaaca 28787059  T
Q  205 tgagcattcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  28787058 tgagcattcaaattgatcagaaataaaattataaattgcttttccaagtgttgatttacc 28786999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 5 - 264
Target Start/End: Original strand, 27610282 - 27610541
Alignment:
Q  5 gcatgtagttgcttcatatcgtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttc 104  Q
    ||||||||||||||||||| |||||||||||| ||||| ||||||| |||||||| |||||||||||||||||| | ||||||||| || ||||||| ||    
T  27610282 gcatgtagttgcttcatattgtcaacatcatcaagaatcaaaagaaccttctttctatgtagcctttcctttatataaggaattccctcactaacacctc 27610381  T
Q  105 ctatcttaattttcagttgaagtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaaca 204  Q
    | | ||||||||  ||||||||| |||  ||||||||||||| ||| |||| |||||| |||||||||| |||| ||||| |||||||||||| ||||||    
T  27610382 caaacttaatttcaagttgaagtgtttttaaaaggagctcctcctgaagatgtttcaatttatttgaagttgaattctctctcacattttcaagaaaaca 27610481  T
Q  205 tgagcattcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27610482 tgagcattcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 27610541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 5 - 264
Target Start/End: Original strand, 27717661 - 27717920
Alignment:
Q  5 gcatgtagttgcttcatatcgtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttc 104  Q
    ||||||||||||||||||| |||||||||||| ||||| ||||||| |||||||| |||||||||||||||||| | ||||||||| || ||||||| ||    
T  27717661 gcatgtagttgcttcatattgtcaacatcatcaagaatcaaaagaaccttctttctatgtagcctttcctttatataaggaattccctcactaacacctc 27717760  T
Q  105 ctatcttaattttcagttgaagtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaaca 204  Q
    | | ||||||||  ||||||||| |||  ||||||||||||| ||| |||| |||||| |||||||||| |||| ||||| |||||||||||| ||||||    
T  27717761 caaacttaatttcaagttgaagtgtttttaaaaggagctccttctgaagatgtttcaatttatttgaagttgaattctctctcacattttcaagaaaaca 27717860  T
Q  205 tgagcattcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27717861 tgagcattcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 27717920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 8 - 264
Target Start/End: Original strand, 27603869 - 27604125
Alignment:
Q  8 tgtagttgcttcatatcgtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttccta 107  Q
    |||||||||  |||||||||||||||||||||||| |||||||||||| ||  ||| |||||||||||||| | || |||||| || ||||||| |||||    
T  27603869 tgtagttgccccatatcgtcaacatcatcgagaatcaaaagaatcttcattgaatgcagcctttcctttatatgagaaattccctcactaacacctccta 27603968  T
Q  108 tcttaattttcagttgaagtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatga 207  Q
     ||||||||  ||||||||| |||  ||||||||||||| |||||||| |||||| ||||||||||||||| ||||| |||||||||||| |||||||||    
T  27603969 acttaatttcaagttgaagtgtttttaaaaggagctcctcctggagatgtttcaatttatttgaagctgaattctctctcacattttcaagaaaacatga 27604068  T
Q  208 gcattcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27604069 gcattcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 27604125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 5 - 264
Target Start/End: Complemental strand, 28782121 - 28781862
Alignment:
Q  5 gcatgtagttgcttcatatcgtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttc 104  Q
    ||||||||||||| |||||||||||||||||||||||| |||||| ||||||||  ||| |||||||||||||| | ||||||||| || ||||||| ||    
T  28782121 gcatgtagttgctccatatcgtcaacatcatcgagaatcaaaagagtcttctttgtatgcagcctttcctttatataaggaattccctcactaacacctc 28782022  T
Q  105 ctatcttaattttcagttgaagtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaaca 204  Q
    ||| |||||||||||||||||||  ||  ||||||||||||| |||||||| |||||| ||||||||||||||| ||||| |||||||||||| ||||||    
T  28782021 ctaacttaattttcagttgaagtgcttttaaaaggagctcctcctggagatgtttcaatttatttgaagctgaattctctctcacattttcaagaaaaca 28781922  T
Q  205 tgagcattcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    |||||||||||||||||||||||| || ||||||| ||||||| ||||||||||||||||    
T  28781921 tgagcattcaaattgatcagcaattaagttataaactgcttttacaagtgttgatttacc 28781862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 264
Target Start/End: Complemental strand, 31285579 - 31285320
Alignment:
Q  5 gcatgtagttgcttcatatcgtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttc 104  Q
    ||||| ||||| ||||||| |||||||||||||||||| |||||||||||||||| |  |||||||||||| ||  | |||||||| || ||||||        
T  31285579 gcatgcagttgattcatattgtcaacatcatcgagaatcaaaagaatcttctttctacatagcctttccttaatgattggaattccctcactaacatggt 31285480  T
Q  105 ctatcttaattttcagttgaagtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaaca 204  Q
    ||| |||||||| || |  || | |||  |||||||||| ||  ||||||| |||||||||||||  ||||||| ||||| ||||||  | || ||||||    
T  31285479 ctaacttaatttccaatccaattgttttcaaaaggagcttctcttggagatgtttcaagttatttttagctgaattctctctcacatcatgaagaaaaca 31285380  T
Q  205 tgagcattcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    | | |  |||||||||||| ||||||||||||| |||||| |||||||||||||||||||    
T  31285379 taatccgtcaaattgatcaccaataaaattatagattgctcttgcaagtgttgatttacc 31285320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 264
Target Start/End: Original strand, 27426780 - 27427033
Alignment:
Q  11 agttgcttcatatcgtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatct 110  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||||||| |   | ||||||||||||  | |  ||||| || || |||  | ||| ||    
T  27426780 agttgcttcatattgtcaacgtcatcgagaatcaaaagaatcttctttctacacaacctttcctttatgattgagattccctcactgacatctgctaact 27426879  T
Q  111 taattttcagttgaagtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagca 210  Q
    ||||||||||||||||| | |   ||||||||  || ||||| |  ||||||| |||||||||||||| ||||| | || | ||||| ||||||| | |     
T  27426880 taattttcagttgaagtgtctttgaaaggagcatctcctggaaacgtttcaagctatttgaagctgaattctctctgacttgttcaagaaaacataaacc 27426979  T
Q  211 ttcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    ||||||||||||||||| ||||||||| |||||| |||||||||||||||||||    
T  27426980 ttcaaattgatcagcaacaaaattatagattgctcttgcaagtgttgatttacc 27427033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 261
Target Start/End: Original strand, 27337277 - 27337513
Alignment:
Q  25 gtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatcttaattttcagttga 124  Q
    |||||||||||||||||| |||||||||||||| | |  |||||||||||| ||  | |||||||| ||   ||||  || || |||||| |||||||||    
T  27337277 gtcaacatcatcgagaatcaaaagaatcttcttcctacatagcctttccttaatgattggaattccctcagaaacatctcttaacttaatgttcagttga 27337376  T
Q  125 agtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcag 224  Q
    | | |||   |||||||||||| |||||||| ||||||||| ||   ||||||| ||||| | ||||| | || ||| |||   | ||||||||||||||    
T  27337377 actgtttttgaaaggagctccttctggagatgtttcaagtttttacgagctgaattctctctaacattatgaagaaagcatactccttcaaattgatcag 27337476  T
Q  225 caataaaattataaattgcttttgcaagtgttgattt 261  Q
    |||| ||||||||||||||||||||||||||||||||    
T  27337477 caatgaaattataaattgcttttgcaagtgttgattt 27337513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 261
Target Start/End: Original strand, 27398017 - 27398253
Alignment:
Q  25 gtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatcttaattttcagttga 124  Q
    |||||||||||||||||| |||||||||||||| | |  |||||||||||| ||  | |||||||| ||   ||||  || || |||||| |||||||||    
T  27398017 gtcaacatcatcgagaatcaaaagaatcttcttcctacatagcctttccttaatgattggaattccctcagaaacatctcttaacttaatgttcagttga 27398116  T
Q  125 agtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcag 224  Q
    | | |||   |||||||||||| |||||||| ||||||||| ||   ||||||| ||||| | ||||| | || ||| |||   | ||||||||||||||    
T  27398117 actgtttttgaaaggagctccttctggagatgtttcaagtttttacgagctgaattctctctaacattatgaagaaagcatactccttcaaattgatcag 27398216  T
Q  225 caataaaattataaattgcttttgcaagtgttgattt 261  Q
    |||| ||||||||||||||||||||||||||||||||    
T  27398217 caatgaaattataaattgcttttgcaagtgttgattt 27398253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 25 - 264
Target Start/End: Complemental strand, 26656965 - 26656726
Alignment:
Q  25 gtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatcttaattttcagttga 124  Q
    |||||||||||||||||| |||||||||||||||| |  ||| |||||||||||  | |||||||| || ||||||  ||||| |||||| |||| |  |    
T  26656965 gtcaacatcatcgagaatcaaaagaatcttctttctagatagtctttcctttatgattggaattccctcactaacatctcctaacttaatattcactcta 26656866  T
Q  125 agtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcag 224  Q
    |   |||   |||||||||||| |||||||| |||||| |||||   ||||||| ||||| | ||||| | || |||||||   | ||||||||||||||    
T  26656865 acagtttttgaaaggagctcctcctggagatgtttcaaattattatgagctgaattctctctgacattgtgaagaaaacatacaccttcaaattgatcag 26656766  T
Q  225 caataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    | | |||||||||||||||||| |||||||||||||||||    
T  26656765 cgacaaaattataaattgctttggcaagtgttgatttacc 26656726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 25 - 264
Target Start/End: Complemental strand, 26762936 - 26762697
Alignment:
Q  25 gtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatcttaattttcagttga 124  Q
    |||||||||||||||||| |||||||||||||||| |  ||| |||||||||||  | |||||||| || ||||||  ||||| |||||| |||| |  |    
T  26762936 gtcaacatcatcgagaatcaaaagaatcttctttctagatagtctttcctttatgattggaattccctcactaacatctcctaacttaatattcactcta 26762837  T
Q  125 agtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcag 224  Q
    |   |||   |||||||||||| |||||||| |||||| |||||   ||||||| ||||| | ||||| | || |||||||   | ||||||||||||||    
T  26762836 acagtttttgaaaggagctcctcctggagatgtttcaaattattatgagctgaattctctctgacattgtgaagaaaacatacaccttcaaattgatcag 26762737  T
Q  225 caataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    | | |||||||||||||||||| |||||||||||||||||    
T  26762736 cgacaaaattataaattgctttggcaagtgttgatttacc 26762697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 25 - 264
Target Start/End: Complemental strand, 26885070 - 26884831
Alignment:
Q  25 gtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatcttaattttcagttga 124  Q
    |||||||||||| ||||| |||||||||||||||| |||||| |||||||||||    |||||||| || ||||||  ||||| |||||| || | || |    
T  26885070 gtcaacatcatcaagaatcaaaagaatcttctttctatgtagtctttcctttatgagtggaattccctcactaacatctcctaacttaatgtttaattta 26884971  T
Q  125 agtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcag 224  Q
    | | |||  |||||||| |||| |||||||| ||||||||||||   || |||| ||||  | || || |  | |||||||   ||||||||||||||||    
T  26884970 attgtttttaaaaggagttcctcctggagatgtttcaagttattatgagttgaattctccctgactttatgcagaaaacatacacattcaaattgatcag 26884871  T
Q  225 caataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    ||| | ||||||||||||||||||||||||||||||||||    
T  26884870 caacataattataaattgcttttgcaagtgttgatttacc 26884831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 25 - 264
Target Start/End: Original strand, 27530483 - 27530722
Alignment:
Q  25 gtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatcttaattttcagttga 124  Q
    |||||||||||| ||||| |||||||||||||||| |  |||||||| ||| ||  | |||||||| |  ||||||| ||||| |||||| | || |  |    
T  27530483 gtcaacatcatcaagaatcaaaagaatcttctttctacatagcctttgcttaatgattggaattccctgactaacacctcctaacttaatgtccaatcta 27530582  T
Q  125 agtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcag 224  Q
    | | |||  |||||||| | ||  ||||||| ||||||||||| |||||  ||| || || |||||||||| | ||||||| |   ||||||||||||||    
T  27530583 actgtttttaaaaggagtttctcttggagatgtttcaagttatctgaagtcgaattcactctcacattttctagaaaacataaaacttcaaattgatcag 27530682  T
Q  225 caataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  27530683 caatgaaattataaattgcttttgcaagtgttgatttacc 27530722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 264
Target Start/End: Complemental strand, 26647476 - 26647240
Alignment:
Q  28 aacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatcttaattttcagttgaagt 127  Q
    ||||||||||||||| |||||||||||||||| |  |||||||||||| ||  | |||||||| || | || |  ||| | |||||| |||| || || |    
T  26647476 aacatcatcgagaatcaaaagaatcttctttctacatagcctttccttaatgattggaattccctcacaaatatgtccaaacttaatgttcactttaact 26647377  T
Q  128 atttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcagcaa 227  Q
     |||   |||||||||||| |||||||| ||||||||||||   ||||||| ||||| | ||||| | || ||| |||   | |||||||||||||||||    
T  26647376 gtttttgaaaggagctccttctggagatgtttcaagttattatgagctgaattctctctgacattatgaagaaagcatacaccttcaaattgatcagcaa 26647277  T
Q  228 taaaattataaattgcttttgcaagtgttgatttacc 264  Q
     |||||||||||| ||||| |||||||||||||||||    
T  26647276 caaaattataaatcgctttggcaagtgttgatttacc 26647240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 264
Target Start/End: Complemental strand, 26753444 - 26753208
Alignment:
Q  28 aacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatcttaattttcagttgaagt 127  Q
    ||||||||||||||| |||||||||||||||| |  |||||||||||| ||  | |||||||| || | || |  ||| | |||||| |||| || || |    
T  26753444 aacatcatcgagaatcaaaagaatcttctttctacatagcctttccttaatgattggaattccctcacaaatatgtccaaacttaatgttcactttaact 26753345  T
Q  128 atttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcagcaa 227  Q
     |||   |||||||||||| |||||||| ||||||||||||   ||||||| ||||| | ||||| | || ||| |||   | |||||||||||||||||    
T  26753344 gtttttgaaaggagctccttctggagatgtttcaagttattatgagctgaattctctctgacattatgaagaaagcatacaccttcaaattgatcagcaa 26753245  T
Q  228 taaaattataaattgcttttgcaagtgttgatttacc 264  Q
     |||||||||||| ||||| |||||||||||||||||    
T  26753244 caaaattataaatcgctttggcaagtgttgatttacc 26753208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 261
Target Start/End: Complemental strand, 26862580 - 26862344
Alignment:
Q  25 gtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatcttaattttcagttga 124  Q
    |||||||||||||||||| |||||||||||| ||| || ||| |||||||||||    |||||||| || ||| ||  ||||| |||||| |||| || |    
T  26862580 gtcaacatcatcgagaatcaaaagaatcttcattctatttagtctttcctttataagtggaattccctcactagcatctcctaacttaatgttcaattta 26862481  T
Q  125 agtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcag 224  Q
    | | |||  ||||| ||||||| |||||||| ||||||| ||||   || |||| ||||| | || || | || |||||||   | |||||||||||| |    
T  26862480 actgtttttaaaagaagctccttctggagatgtttcaagctattatgagttgaattctctctaactttatgaagaaaacatacaccttcaaattgatcgg 26862381  T
Q  225 caataaaattataaattgcttttgcaagtgttgattt 261  Q
    ||| |||||||||||||||||||||||||||||||||    
T  26862380 caacaaaattataaattgcttttgcaagtgttgattt 26862344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 264
Target Start/End: Complemental strand, 26803466 - 26803207
Alignment:
Q  5 gcatgtagttgcttcatatcgtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttc 104  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| |   || |||||||||||  | ||||| || || | ||||        
T  26803466 gcatgtagttgctccatatcgtcaacatcatcgagaatcaaaagaatcttatttctacacagtctttcctttataattggaatcccctcacaaacatgat 26803367  T
Q  105 ctatcttaattttcagttgaagtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaaca 204  Q
    ||| ||| ||||||| |  |  | |||  | ||| |||| ||  ||||||| |||||||||||||  ||||||| ||||| ||||||  | || ||||||    
T  26803366 ctaacttgattttcaatccagttgtttttagaagaagcttctcttggagatgtttcaagttattttgagctgaattctctctcacatcatgaagaaaaca 26803267  T
Q  205 tgagcattcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    | | | ||||||||||||||||| ||||||||| |||||| ||||||||| |||||||||    
T  26803266 taaaccttcaaattgatcagcaacaaaattatagattgctcttgcaagtgctgatttacc 26803207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 157 - 264
Target Start/End: Complemental strand, 27215320 - 27215213
Alignment:
Q  157 tttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcagcaataaaattataaattgcttttgcaagtgtt 256  Q
    ||||||||||||| ||| |||| |||||||||||| ||| | |||| |||| | |||||| ||||||||||| |||||| ||||||||||||||||||||    
T  27215320 tttcaagttatttaaagttgaattctctttcacatcttctagaaaatatgaaccttcaaactgatcagcaatgaaattaaaaattgcttttgcaagtgtt 27215221  T
Q  257 gatttacc 264  Q
    ||||||||    
T  27215220 gatttacc 27215213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 264
Target Start/End: Original strand, 27705566 - 27705825
Alignment:
Q  5 gcatgtagttgcttcatatcgtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttc 104  Q
    ||||| ||||||||| |||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||    ||||| || || | ||||        
T  27705566 gcatgcagttgcttcctatcgtcaacatcatcgagaatcaaaagaatcttctttctacacagcctttcctttatgaatggaatcccctcacaaacatgat 27705665  T
Q  105 ctatcttaattttcagttgaagtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaaca 204  Q
    ||| ||| ||||||  |  |  | |||  | ||| |||| ||  ||||||| |||||||| ||||  ||||||| ||||| ||||||  | || ||||||    
T  27705666 ctaactttattttcgatccagttgtttttagaagaagcttctcttggagatgtttcaagtcattttgagctgaattctctctcacatcatgaagaaaaca 27705765  T
Q  205 tgagcattcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    | | | ||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  27705766 taaaccttcaaattgatcagcaacaaaattataaattgctcttgcaagtgttgatttacc 27705825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 29 - 261
Target Start/End: Complemental strand, 26624267 - 26624035
Alignment:
Q  29 acatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatcttaattttcagttgaagta 128  Q
    |||||||||||||| |||||||||||||||| |  |||||||||||| ||  | | |||||| || ||||||    | | |||||||| || |  |  |     
T  26624267 acatcatcgagaatcaaaagaatcttctttctacatagcctttccttaatgattgaaattccctcactaacatggtccaacttaatttccaatccagttg 26624168  T
Q  129 tttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcagcaat 228  Q
    ||| ||||||||||| ||  ||||||| |||||||||||||  ||||||| ||||| ||||||  | || ||||||| | | |||||||||||||||||     
T  26624167 ttttaaaaaggagcttctcttggagatgtttcaagttattttgagctgaattctctctcacatcatgaagaaaacataaaccttcaaattgatcagcaac 26624068  T
Q  229 aaaattataaattgcttttgcaagtgttgattt 261  Q
    ||| ||||| |||||| ||||||||||||||||    
T  26624067 aaagttatagattgctcttgcaagtgttgattt 26624035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 29 - 261
Target Start/End: Complemental strand, 26730244 - 26730012
Alignment:
Q  29 acatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatcttaattttcagttgaagta 128  Q
    |||||||||||||| |||||||||||||||| |  |||||||||||| ||  | | |||||| || ||||||    | | |||||||| || |  |  |     
T  26730244 acatcatcgagaatcaaaagaatcttctttctacatagcctttccttaatgattgaaattccctcactaacatggtccaacttaatttccaatccagttg 26730145  T
Q  129 tttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcagcaat 228  Q
    ||| ||||||||||| ||  ||||||| |||||||||||||  ||||||| ||||| ||||||  | || ||||||| | | |||||||||||||||||     
T  26730144 ttttaaaaaggagcttctcttggagatgtttcaagttattttgagctgaattctctctcacatcatgaagaaaacataaaccttcaaattgatcagcaac 26730045  T
Q  229 aaaattataaattgcttttgcaagtgttgattt 261  Q
    ||| ||||| |||||| ||||||||||||||||    
T  26730044 aaagttatagattgctcttgcaagtgttgattt 26730012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 261
Target Start/End: Complemental strand, 27679970 - 27679714
Alignment:
Q  5 gcatgtagttgcttcatatcgtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttc 104  Q
    ||||| |||||||||| || |||||||||||||||||| |||||||||||||||| |  ||  |||||||||||    |||||||| || ||||||        
T  27679970 gcatgcagttgcttcaaattgtcaacatcatcgagaatcaaaagaatcttctttctacataatctttcctttatgactggaattccctcactaacatggt 27679871  T
Q  105 ctatcttaattttcagttgaagtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaaca 204  Q
    ||| |||||||| ||       | |||  |||||||||| ||  ||||||| |||||||||||||  ||||||| ||||| ||||||  | || ||||||    
T  27679870 ctaacttaatttccaaacctgttgtttttaaaaggagcttctcttggagatatttcaagttattttgagctgaattctctctcacatcatgaagaaaaca 27679771  T
Q  205 tgagcattcaaattgatcagcaataaaattataaattgcttttgcaagtgttgattt 261  Q
    ||| | ||| |||||||| |||| ||||||||| |||  | ||||||||||||||||    
T  27679770 tgaaccttcgaattgatctgcaacaaaattatagatttgtcttgcaagtgttgattt 27679714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 261
Target Start/End: Original strand, 27697768 - 27698004
Alignment:
Q  25 gtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatcttaattttcagttga 124  Q
    ||||||||| |||||||| |||||||||||||||| |  |||||||||||| ||  | |||||||| || ||||||    |||  ||||||| |  |  |    
T  27697768 gtcaacatcgtcgagaatcaaaagaatcttctttctacatagcctttccttaatgattggaattccgtcactaacatggtctaaattaatttccgatcca 27697867  T
Q  125 agtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcag 224  Q
      | ||| ||||||||||| ||  ||||||| || ||||||||||  ||||||| ||  | ||||||| | || ||||||| | | ||||||||||||||    
T  27697868 gttgttttaaaaaggagcttctcttggagatgttccaagttatttttagctgaattcattctcacattatgaagaaaacataaaccttcaaattgatcag 27697967  T
Q  225 caataaaattataaattgcttttgcaagtgttgattt 261  Q
    |||  |||||||| |||||| ||||||||||||||||    
T  27697968 caaccaaattatagattgctcttgcaagtgttgattt 27698004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 264
Target Start/End: Complemental strand, 26143868 - 26143629
Alignment:
Q  25 gtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatcttaattttcagttga 124  Q
    |||||||||||| ||||| |||||||||||||||| |  ||| |||||||| ||  | | |||||| || ||||||  ||||| ||||   |||| || |    
T  26143868 gtcaacatcatcaagaatcaaaagaatcttctttctagatagtctttccttaatgattgaaattccctcactaacatctcctaacttatggttcaattta 26143769  T
Q  125 agtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcag 224  Q
    | | ||   |||||||| || | |||||||| ||||| ||||||   |  |||| ||||| | ||||| | || |||||||   | ||||||||||||||    
T  26143768 actgttcttaaaaggagatcttcctggagatgtttcaggttattatgacttgaattctctctgacattatgaagaaaacatacaccttcaaattgatcag 26143669  T
Q  225 caataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    ||| ||||||||||| ||||||||||||||||||||||||    
T  26143668 caacaaaattataaactgcttttgcaagtgttgatttacc 26143629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 264
Target Start/End: Complemental strand, 25511782 - 25511653
Alignment:
Q  135 aaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcagcaataaaatt 234  Q
    ||||||||| || |||||||| ||||||||| ||   || |||| ||||| | ||||| | || |||||||   | ||||||||||||||||||| ||||    
T  25511782 aaaggagcttcttctggagatgtttcaagttcttaagagttgaattctctctgacattatgaagaaaacatacactttcaaattgatcagcaatagaatt 25511683  T
Q  235 ataaattgcttttgcaagtgttgatttacc 264  Q
    | ||| ||||||||||||||||||||||||    
T  25511682 aaaaactgcttttgcaagtgttgatttacc 25511653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 25580536 - 25580483
Alignment:
Q  211 ttcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  25580536 ttcaaattgatcagcaacaaaattataaactgcttttgcaagtgttgatttacc 25580483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 264
Target Start/End: Complemental strand, 26056812 - 26056683
Alignment:
Q  135 aaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcagcaataaaatt 234  Q
    ||||||||| || |||||||| ||||||||| ||   || |||| ||||| | ||||| | || |||||||   | ||||||||||||||||||| ||||    
T  26056812 aaaggagcttcttctggagatgtttcaagttcttaagagttgaattctctctgacattatgaagaaaacatacaccttcaaattgatcagcaatagaatt 26056713  T
Q  235 ataaattgcttttgcaagtgttgatttacc 264  Q
    | ||| ||||||||||||||||||||||||    
T  26056712 aaaaactgcttttgcaagtgttgatttacc 26056683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 264
Target Start/End: Complemental strand, 26076782 - 26076653
Alignment:
Q  135 aaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcagcaataaaatt 234  Q
    ||||||||| || |||||||| ||||||||| ||   || |||| ||||| | ||||| | || |||||||   | ||||||||||||||||||| ||||    
T  26076782 aaaggagcttcttctggagatgtttcaagttcttaagagttgaattctctctgacattatgaagaaaacatacaccttcaaattgatcagcaatagaatt 26076683  T
Q  235 ataaattgcttttgcaagtgttgatttacc 264  Q
    | ||| ||||||||||||||||||||||||    
T  26076682 aaaaactgcttttgcaagtgttgatttacc 26076653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 264
Target Start/End: Original strand, 25492624 - 25492740
Alignment:
Q  148 ctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcagcaataaaattataaattgctttt 247  Q
    |||||||| |||||||||  ||| || |||| ||||| |||||| | | | ||||||| | | |||||||||||||||||| || ||||| |||| ||||    
T  25492624 ctggagatctttcaagtttcttggagttgaattctctctcacatctcctagaaaacataaaccttcaaattgatcagcaatgaagttatagattgatttt 25492723  T
Q  248 gcaagtgttgatttacc 264  Q
    |||||||||||||||||    
T  25492724 gcaagtgttgatttacc 25492740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 264
Target Start/End: Complemental strand, 28140388 - 28140296
Alignment:
Q  172 agctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    ||||||| | ||| ||||||| | || ||||||  | |||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  28140388 agctgaaatttctctcacattatgaagaaaacacaaacattcaaattgatcggcaataaaattataaattgcttgtgcaagtgttgttttacc 28140296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 25483873 - 25483820
Alignment:
Q  211 ttcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  25483873 ttcaaattgatcagcaagaaaattaaaaactgcttttgcaagtgttgatttacc 25483820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 25539357 - 25539304
Alignment:
Q  211 ttcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  25539357 ttcaaattgatcagcaacaaaattaaaaactgcttttgcaagtgttgatttacc 25539304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 26824633 - 26824580
Alignment:
Q  211 ttcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    |||||||| |||||||||| ||||| || |||||||||||||||||||||||||    
T  26824633 ttcaaatttatcagcaatagaattaaaagttgcttttgcaagtgttgatttacc 26824580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 26937843 - 26937790
Alignment:
Q  211 ttcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    ||||||||||||| |||| |||||||||||||||  ||||||||||||||||||    
T  26937843 ttcaaattgatcaccaatcaaattataaattgctcgtgcaagtgttgatttacc 26937790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 28097809 - 28097857
Alignment:
Q  209 cattcaaattgatcagcaataaaattataaattgcttttgcaagtgttg 257  Q
    |||||||||||| ||||||| ||||||||||  ||||||||||||||||    
T  28097809 cattcaaattgaccagcaatgaaattataaaccgcttttgcaagtgttg 28097857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 29843353 - 29843408
Alignment:
Q  209 cattcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    |||||||||| ||||||||| |||||||||||||||   |||||||||| ||||||    
T  29843353 cattcaaatttatcagcaatcaaattataaattgctcgagcaagtgttgttttacc 29843408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 25074683 - 25074647
Alignment:
Q  209 cattcaaattgatcagcaataaaattataaattgctt 245  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  25074683 cattcaaattgattagcaatcaaattataaattgctt 25074647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 26849528 - 26849480
Alignment:
Q  209 cattcaaattgatcagcaataaaattataaattgcttttgcaagtgttg 257  Q
    ||||||||||||||||||||  ||||||||| |||||  ||||||||||    
T  26849528 cattcaaattgatcagcaatcgaattataaactgcttgagcaagtgttg 26849480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 26975767 - 26975719
Alignment:
Q  209 cattcaaattgatcagcaataaaattataaattgcttttgcaagtgttg 257  Q
    ||||||||||||| |||||| |||||||||| |||||  ||||||||||    
T  26975767 cattcaaattgattagcaatcaaattataaactgcttgagcaagtgttg 26975719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 5 - 264
Target Start/End: Complemental strand, 8507 - 8248
Alignment:
Q  5 gcatgtagttgcttcatatcgtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttc 104  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||  ||| |||||||||||||| | ||||||||| || ||||||||||    
T  8507 gcatgtagttgcttcatatcgtcaacatcatcgagaatcaaaagagtcttctttgtatgcagcctttcctttatataaggaattccctcactaacacttc 8408  T
Q  105 ctatcttaattttcagttgaagtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaaca 204  Q
    ||| |||| ||||| |||||||| |||  |||||||| |||| |||||||| |||||| ||||||||||||||| ||||| |||||||||||| ||||||    
T  8407 ctaacttagttttctgttgaagtgtttttaaaaggagttcctcctggagatgtttcaatttatttgaagctgaattctctctcacattttcaagaaaaca 8308  T
Q  205 tgagcattcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  8307 tgagcattcaaattgatcagaaataaaattataaattgcttttccaagtgttgatttacc 8248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 5 - 264
Target Start/End: Original strand, 12837 - 13096
Alignment:
Q  5 gcatgtagttgcttcatatcgtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttc 104  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||  ||| |||||||||||||| | ||||||||| || ||||||||||    
T  12837 gcatgtagttgcttcatatcgtcaacatcatcgagaatcaaaagagtcttctttgtatgcagcctttcctttatataaggaattccctcactaacacttc 12936  T
Q  105 ctatcttaattttcagttgaagtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaaca 204  Q
    ||| |||| ||||| |||||||| |||  |||||||| |||| |||||||| |||||| ||||||||||||||| ||||| |||||||||||| ||||||    
T  12937 ctaacttagttttctgttgaagtgtttttaaaaggagttcctcctggagatgtttcaatttatttgaagctgaattctctctcacattttcaagaaaaca 13036  T
Q  205 tgagcattcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  13037 tgagcattcaaattgatcagaaataaaattataaattgcttttccaagtgttgatttacc 13096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 8 - 264
Target Start/End: Original strand, 3877 - 4133
Alignment:
Q  8 tgtagttgcttcatatcgtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttccta 107  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||||| | || |||||| || ||||||| |||||    
T  3877 tgtagttgctccatatcgtcaacatcatcgagaatcaaaagaatcttctttgaatgcagcctttcctttatatgagaaattccctcactaacacctccta 3976  T
Q  108 tcttaattttcagttgaagtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatga 207  Q
     ||||||||  ||||||||| |||  ||||||||||||| |||||||| |||||| ||||||||||||||| ||||| |||||||||||| |||||||||    
T  3977 acttaatttcaagttgaagtgtttttaaaaggagctcctcctggagatgtttcaatttatttgaagctgaattctctctcacattttcaagaaaacatga 4076  T
Q  208 gcattcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  4077 gcattcaaattcatcagcaataaaattataaattgcttttccaagtgttgatttacc 4133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 5 - 264
Target Start/End: Original strand, 2701 - 2960
Alignment:
Q  5 gcatgtagttgcttcatatcgtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttc 104  Q
    ||||||||||||||||||| |||||||||||| ||||| ||||||| |||||||| |||||||||||||||||| | ||||||||| || ||||||| ||    
T  2701 gcatgtagttgcttcatattgtcaacatcatcaagaatcaaaagaaccttctttctatgtagcctttcctttatataaggaattccctcactaacacctc 2800  T
Q  105 ctatcttaattttcagttgaagtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaaca 204  Q
    | | ||||||||  ||||||||| |||  ||||||||||||  ||| |||| |||||| ||||||||||||||| ||||| |||||||||||| ||||||    
T  2801 caaacttaatttcaagttgaagtgtttttaaaaggagctccaactgaagatgtttcaatttatttgaagctgaattctctctcacattttcaagaaaaca 2900  T
Q  205 tgagcattcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2901 tgagcattcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 2960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 18678742 - 18678977
Alignment:
Q  29 acatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatcttaattttcagttgaagta 128  Q
    |||||||||||||| |||||||||||||||  |||||||||||||||||| | ||||||||| || ||||||| ||||| |||||||||||||  ||||     
T  18678742 acatcatcgagaatcaaaagaatcttctttgtatgtagcctttcctttatataaggaattccctcactaacacctcctaacttaattttcagtgaaagtg 18678841  T
Q  129 tttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcagcaat 228  Q
    |||  |||||||| |||| |||||||| |||||| | ||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  18678842 tttttaaaaggagttcctcctggagatgtttcaattgatttgaagctgaattctctctcacattttcaagaaaacatgagcattcaaattgatcagcaat 18678941  T
Q  229 aaaattataaattgcttttgcaagtgttgatttacc 264  Q
    |||||||||||||||||||||||||||| |||||||    
T  18678942 aaaattataaattgcttttgcaagtgttaatttacc 18678977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 25 - 264
Target Start/End: Original strand, 18698578 - 18698817
Alignment:
Q  25 gtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatcttaattttcagttga 124  Q
    |||||||||||||||||| |||||||||||||||  ||| |||||||||||||| | ||||||||| || ||||||| ||||| |||||||||||||       
T  18698578 gtcaacatcatcgagaatcaaaagaatcttctttgtatgcagcctttcctttatataaggaattccctcactaacacctcctaacttaattttcagtgct 18698677  T
Q  125 agtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcag 224  Q
    ||| |||  |||||||| |||| |||||||| |||||| | ||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||    
T  18698678 agtgtttttaaaaggagttcctcctggagatgtttcaattgatttgaagctgaattctctctcacattttcaagaaaacatgagcattcaaattgatcag 18698777  T
Q  225 caataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  18698778 caataaaattataaattgctttcgcaagtgttgatttacc 18698817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 261
Target Start/End: Original strand, 18723243 - 18723499
Alignment:
Q  5 gcatgtagttgcttcatatcgtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttc 104  Q
    ||||| ||||| |||| || |||||||||||||||||| |||||||||||||||  ||||||||||| |||||| | ||||||||  || ||||||| ||    
T  18723243 gcatgcagttgtttcaaattgtcaacatcatcgagaatcaaaagaatcttctttgtatgtagccttttctttatataaggaattctctcactaacacctc 18723342  T
Q  105 ctatcttaattttcagttgaagtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaaca 204  Q
    |||  ||||||||||||  |||| |||  |||||||| |||| |||||||| |||||| | ||||||||||||| ||||| |||| ||||||| ||||||    
T  18723343 ctaagttaattttcagtgaaagtgtttttaaaaggagttcctcctggagatgtttcaattgatttgaagctgaattctctctcacgttttcaagaaaaca 18723442  T
Q  205 tgagcattcaaattgatcagcaataaaattataaattgcttttgcaagtgttgattt 261  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  18723443 tgagcattcaaattgatcagcaataaaattataaattccttttgcaagtgttgattt 18723499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 25 - 261
Target Start/End: Original strand, 18730682 - 18730918
Alignment:
Q  25 gtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatcttaattttcagttga 124  Q
    |||||||||||||||||| |||||||||||||||  |||||||||||||||||| |  |||||||| || ||||||| ||||| |||||||||||||       
T  18730682 gtcaacatcatcgagaatcaaaagaatcttctttgtatgtagcctttcctttatatagggaattccctcactaacacctcctaacttaattttcagtgct 18730781  T
Q  125 agtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcag 224  Q
    ||| |||  |||||||| |||| |||||||| |||||| | ||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||    
T  18730782 agtgtttttaaaaggagttcctcctggagatgtttcaattgatttgaagctgaattctctctcacattttcaagaaaacatgagcattcaaattgatcag 18730881  T
Q  225 caataaaattataaattgcttttgcaagtgttgattt 261  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  18730882 caataaaattataaattactttagcaagtgttgattt 18730918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 29 - 261
Target Start/End: Original strand, 18654659 - 18654891
Alignment:
Q  29 acatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatcttaattttcagttgaagta 128  Q
    |||||||||||||| |||||||||||||||  |||||||||||||||||| | ||||||||| || ||||||| ||||| |||||||||||||  ||||     
T  18654659 acatcatcgagaatcaaaagaatcttctttgtatgtagcctttcctttatataaggaattccctcactaacacctcctaacttaattttcagtgaaagtg 18654758  T
Q  129 tttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcagcaat 228  Q
    |||  |||||||| |||| |||||||| |||||| | |||||||| |||| | ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  18654759 tttttaaaaggagttcctcctggagatgtttcaattgatttgaagatgaattttctctcacattttcaagaaaacatgagcattcaaattgatcagcaat 18654858  T
Q  229 aaaattataaattgcttttgcaagtgttgattt 261  Q
    | |||||| ||||| ||||||||||||||||||    
T  18654859 acaattattaattgattttgcaagtgttgattt 18654891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 18074775 - 18074522
Alignment:
Q  11 agttgcttcatatcgtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatct 110  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||||||| |   | ||||||||||||  | |  ||||| || || |||  | ||| ||    
T  18074775 agttgcttcatattgtcaacgtcatcgagaatcaaaagaatcttctttctacacaacctttcctttatgattgagattccctcactgacatctgctaact 18074676  T
Q  111 taattttcagttgaagtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagca 210  Q
    ||||||||||||||||| | |   ||||||||  || ||||| |  ||||||| |||||||||||||| ||||| | || | ||||| ||||||| | |     
T  18074675 taattttcagttgaagtgtctttgaaaggagcatctcctggaaacgtttcaagctatttgaagctgaattctctctgacttgttcaagaaaacataaacc 18074576  T
Q  211 ttcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    ||||||||||||||||| ||||||||| |||||| |||||||||||||||||||    
T  18074575 ttcaaattgatcagcaacaaaattatagattgctcttgcaagtgttgatttacc 18074522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 5090319 - 5090374
Alignment:
Q  209 cattcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    ||||||||||||| |||||| ||||| |||||||||||| ||||||| | ||||||    
T  5090319 cattcaaattgatgagcaatgaaattgtaaattgcttttccaagtgtggttttacc 5090374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 60583 - 60330
Alignment:
Q  11 agttgcttcatatcgtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatct 110  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||||||| |   | ||||||||||||  | |  ||||| || || |||  | ||| ||    
T  60583 agttgcttcatattgtcaacgtcatcgagaatcaaaagaatcttctttctacacaacctttcctttatgattgagattccctcactgacatctgctaact 60484  T
Q  111 taattttcagttgaagtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagca 210  Q
    ||||||||||||||||| | |   ||||||||  || ||||| |  ||||||| |||||||||||||| ||||| | || | ||||| ||||||| | |     
T  60483 taattttcagttgaagtgtctttgaaaggagcatctcctggaaacgtttcaagctatttgaagctgaattctctctgacttgttcaagaaaacataaacc 60384  T
Q  211 ttcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    ||||||||||||||||| ||||||||| |||||| |||||||||||||||||||    
T  60383 ttcaaattgatcagcaacaaaattatagattgctcttgcaagtgttgatttacc 60330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 28163562 - 28163796
Alignment:
Q  29 acatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatcttaattttcagttgaagta 128  Q
    |||||||| ||||| |||||||| || |||| |||||||||||  |||||  | | |||||| || ||||||| ||||| |||||| | |  |  || |     
T  28163562 acatcatcaagaatcaaaagaattttatttctatgtagcctttgttttatgattgtaattccctcactaacacctcctaacttaatgtccgatctaactg 28163661  T
Q  129 tttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcagcaat 228  Q
    |||||||||| ||||| | |||||||| |||||||||   || || |||| ||||| |||||| ||| | ||||||| | | ||||||||||||||||||    
T  28163662 tttcaaaaag-agctcttcctggagatgtttcaagttggatggagttgaattctctctcacatcttctagaaaacataaaccttcaaattgatcagcaat 28163760  T
Q  229 aaaattataaattgcttttgcaagtgttgatttacc 264  Q
     |||||||||||||||||||||||||||||||||||    
T  28163761 gaaattataaattgcttttgcaagtgttgatttacc 28163796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 28126861 - 28127096
Alignment:
Q  29 acatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatcttaattttcagttgaagta 128  Q
    |||||||| ||||| ||||||||||||||||    ||||||||  |||||  | | |||||| || ||||||| ||||| |||||| | || |  || |     
T  28126861 acatcatcaagaatcaaaagaatcttctttctgcatagcctttgttttatgattgcaattccctcactaacacctcctaacttaatgtccaatccaactg 28126960  T
Q  129 tttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattgatcagcaat 228  Q
    |||  ||||||||||  |  ||||||| |||||| |||| || || |||| ||||| |||||| ||| | ||||||| | | ||||||||||||||||||    
T  28126961 ttttcaaaaggagcttttcttggagatgtttcaaattatatggagttgaaatctctctcacatcttctagaaaacataaaccttcaaattgatcagcaat 28127060  T
Q  229 aaaattataaattgcttttgcaagtgttgatttacc 264  Q
     |||||||||||||||||||||||||||||||||||    
T  28127061 gaaattataaattgcttttgcaagtgttgatttacc 28127096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 264
Target Start/End: Original strand, 267517 - 267761
Alignment:
Q  20 atatcgtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatcttaattttca 119  Q
    ||||||| ||||||||||||||| |||||||||||||||| |  |||||||||||| ||  | ||||| || || ||||||    ||| |||||||| ||    
T  267517 atatcgttaacatcatcgagaatcaaaagaatcttctttctacatagcctttccttaatgattggaatgccctcactaacatggtctaacttaatttcca 267616  T
Q  120 gttgaagtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaacatgagcattcaaattg 219  Q
     |  |  | |||  |||||||||| ||  ||||||| |||||||||| ||  ||||||| | ||| ||||||  | || ||||||| | | |||||||||    
T  267617 atccagttgtttttaaaaggagcttctcttggagatgtttcaagttacttatagctgaattttctctcacatcatgaagaaaacataatccttcaaattg 267716  T
Q  220 atcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    |||||||||||||||||| |||||| ||||||| |||||||||||    
T  267717 atcagcaataaaattatagattgctcttgcaagggttgatttacc 267761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 264
Target Start/End: Original strand, 29273000 - 29273259
Alignment:
Q  5 gcatgtagttgcttcatatcgtcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttc 104  Q
    |||||||||||||||| ||  ||||||||||||||||| |||||||| ||||||| |  |||||| ||||||||  | ||||| || || ||||||        
T  29273000 gcatgtagttgcttcaaattatcaacatcatcgagaatcaaaagaattttctttctacttagcctctcctttataattggaatcccctcactaacatgat 29273099  T
Q  105 ctatcttaattttcagttgaagtatttcaaaaaggagctcctgctggagatttttcaagttatttgaagctgaactctctttcacattttcaacaaaaca 204  Q
    ||| |||||||| || |  |  | |||  |||||||| | ||  ||||||| |||||||||||||  ||||||| ||||| ||||||  | || ||||||    
T  29273100 ctaacttaatttccaatccagttgtttttaaaaggagtttctcttggagatgtttcaagttatttttagctgaattctctctcacatcatgaagaaaaca 29273199  T
Q  205 tgagcattcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    | |   ||||||||||||||||| ||||||||| |||||| ||||||| |||||||||||    
T  29273200 taaatcttcaaattgatcagcaaaaaaattatagattgctcttgcaagggttgatttacc 29273259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 16691683 - 16691628
Alignment:
Q  209 cattcaaattgatcagcaataaaattataaattgcttttgcaagtgttgatttacc 264  Q
    |||||||||||||||||||| |||||||||||||||   |||||||||| ||||||    
T  16691683 cattcaaattgatcagcaatcaaattataaattgctcgagcaagtgttgttttacc 16691628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 114
Target Start/End: Complemental strand, 16691866 - 16691778
Alignment:
Q  26 tcaacatcatcgagaattaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctatcttaat 114  Q
    ||||||||||||||||| ||||||| ||| |||   ||||||||||  |||||| | ||||||||||| ||||||  ||||| ||||||    
T  16691866 tcaacatcatcgagaatcaaaagaacctttttttgttgtagcctttgttttattattggaattccttcactaacatgtcctaacttaat 16691778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 3280475 - 3280427
Alignment:
Q  209 cattcaaattgatcagcaataaaattataaattgcttttgcaagtgttg 257  Q
    ||||||||||||| |||||| |||||||||| |||| ||||||| ||||    
T  3280475 cattcaaattgattagcaatgaaattataaactgctcttgcaagagttg 3280427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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